Results 1 - 20 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 126041 | 1.09 | 0.000608 |
Target: 5'- gGGCCUGCGGUGGCUCCGAGAGCGGCAc -3' miRNA: 3'- -CCGGACGCCACCGAGGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 54252 | 0.81 | 0.063451 |
Target: 5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3' miRNA: 3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96363 | 0.78 | 0.11172 |
Target: 5'- gGGCCgGCGGUGGCaauggcggggCCGGcGGCGGCAa -3' miRNA: 3'- -CCGGaCGCCACCGa---------GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 116671 | 0.77 | 0.123283 |
Target: 5'- uGGCCUGCGuGUGGgUCCGgcgcugcGGGcGCGGCAc -3' miRNA: 3'- -CCGGACGC-CACCgAGGC-------UCU-CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 79398 | 0.75 | 0.173627 |
Target: 5'- cGGCCgcgcggGCGcgagccggaccaccGUGGCgcCCGAGGGCGGCGg -3' miRNA: 3'- -CCGGa-----CGC--------------CACCGa-GGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96300 | 0.74 | 0.197425 |
Target: 5'- gGGCCggcgGCGGcaaUGGCggggCCGGcGGCGGCAa -3' miRNA: 3'- -CCGGa---CGCC---ACCGa---GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 88886 | 0.74 | 0.197425 |
Target: 5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3' miRNA: 3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32836 | 0.74 | 0.207122 |
Target: 5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3' miRNA: 3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 37150 | 0.73 | 0.222437 |
Target: 5'- gGGCCUuuGG-GGCggCCGGGAaGCGGCAc -3' miRNA: 3'- -CCGGAcgCCaCCGa-GGCUCU-CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 103790 | 0.73 | 0.238147 |
Target: 5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3' miRNA: 3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 11324 | 0.72 | 0.250095 |
Target: 5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3' miRNA: 3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32985 | 0.72 | 0.255956 |
Target: 5'- cGCCgggGCGGgcagGGCggCCG-GAGCGGCc -3' miRNA: 3'- cCGGa--CGCCa---CCGa-GGCuCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 31108 | 0.72 | 0.261929 |
Target: 5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3' miRNA: 3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 24407 | 0.72 | 0.261929 |
Target: 5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3' miRNA: 3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34457 | 0.72 | 0.261929 |
Target: 5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3' miRNA: 3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 133921 | 0.72 | 0.261929 |
Target: 5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3' miRNA: 3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 118423 | 0.72 | 0.27359 |
Target: 5'- cGCCUGCGGUcucggcgccguggGGCUCCuGcuGGUGGCGg -3' miRNA: 3'- cCGGACGCCA-------------CCGAGG-CucUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 978 | 0.72 | 0.274215 |
Target: 5'- gGGCCgGCGG-GGCuUCCGccgcGGCGGCGg -3' miRNA: 3'- -CCGGaCGCCaCCG-AGGCuc--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 11660 | 0.72 | 0.28053 |
Target: 5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3' miRNA: 3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 21949 | 0.72 | 0.28053 |
Target: 5'- cGGCUcGCGGcGGCaCCGGGGGgGGCu -3' miRNA: 3'- -CCGGaCGCCaCCGaGGCUCUCgCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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