Results 1 - 20 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 54252 | 0.81 | 0.063451 |
Target: 5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3' miRNA: 3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 49043 | 0.7 | 0.332302 |
Target: 5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3' miRNA: 3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34394 | 0.7 | 0.335214 |
Target: 5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3' miRNA: 3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 59855 | 0.66 | 0.550609 |
Target: 5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3' miRNA: 3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 11324 | 0.72 | 0.250095 |
Target: 5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3' miRNA: 3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 24407 | 0.72 | 0.261929 |
Target: 5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3' miRNA: 3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 133921 | 0.72 | 0.261929 |
Target: 5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3' miRNA: 3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 11660 | 0.72 | 0.28053 |
Target: 5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3' miRNA: 3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 76389 | 0.71 | 0.306941 |
Target: 5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3' miRNA: 3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 68073 | 0.71 | 0.320844 |
Target: 5'- cGCCUGCGGcggGGCgaacgCCGcggcgcGAGCGGUg -3' miRNA: 3'- cCGGACGCCa--CCGa----GGCu-----CUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 59886 | 0.71 | 0.313834 |
Target: 5'- cGGCCUccGCGuUGGCgagGAGGGCGGCGc -3' miRNA: 3'- -CCGGA--CGCcACCGaggCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96918 | 0.71 | 0.305577 |
Target: 5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3' miRNA: 3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 88886 | 0.74 | 0.197425 |
Target: 5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3' miRNA: 3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 85782 | 0.71 | 0.313834 |
Target: 5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3' miRNA: 3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32836 | 0.74 | 0.207122 |
Target: 5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3' miRNA: 3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 48488 | 0.71 | 0.293504 |
Target: 5'- gGGUCgagcGCGGcGcGCUCCG-GGGCGGCGc -3' miRNA: 3'- -CCGGa---CGCCaC-CGAGGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 19802 | 0.71 | 0.320844 |
Target: 5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3' miRNA: 3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 37583 | 0.7 | 0.335214 |
Target: 5'- uGGCCgcUGCGGcugcGGCggCCGGGGGcCGGCc -3' miRNA: 3'- -CCGG--ACGCCa---CCGa-GGCUCUC-GCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 103790 | 0.73 | 0.238147 |
Target: 5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3' miRNA: 3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34457 | 0.72 | 0.261929 |
Target: 5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3' miRNA: 3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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