miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 54252 0.81 0.063451
Target:  5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3'
miRNA:   3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 49043 0.7 0.332302
Target:  5'- aGCC-GUGGUGGCgcgcagcucacggCCGcGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCACCGa------------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34394 0.7 0.335214
Target:  5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59855 0.66 0.550609
Target:  5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3'
miRNA:   3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133921 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 11660 0.72 0.28053
Target:  5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3'
miRNA:   3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 76389 0.71 0.306941
Target:  5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3'
miRNA:   3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 68073 0.71 0.320844
Target:  5'- cGCCUGCGGcggGGCgaacgCCGcggcgcGAGCGGUg -3'
miRNA:   3'- cCGGACGCCa--CCGa----GGCu-----CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 59886 0.71 0.313834
Target:  5'- cGGCCUccGCGuUGGCgagGAGGGCGGCGc -3'
miRNA:   3'- -CCGGA--CGCcACCGaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96918 0.71 0.305577
Target:  5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3'
miRNA:   3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 88886 0.74 0.197425
Target:  5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3'
miRNA:   3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 85782 0.71 0.313834
Target:  5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3'
miRNA:   3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 32836 0.74 0.207122
Target:  5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3'
miRNA:   3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 48488 0.71 0.293504
Target:  5'- gGGUCgagcGCGGcGcGCUCCG-GGGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCaC-CGAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 19802 0.71 0.320844
Target:  5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3'
miRNA:   3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37583 0.7 0.335214
Target:  5'- uGGCCgcUGCGGcugcGGCggCCGGGGGcCGGCc -3'
miRNA:   3'- -CCGG--ACGCCa---CCGa-GGCUCUC-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 103790 0.73 0.238147
Target:  5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3'
miRNA:   3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.