miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 419 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 597 0.68 0.457311
Target:  5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 978 0.72 0.274215
Target:  5'- gGGCCgGCGG-GGCuUCCGccgcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCaCCG-AGGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 2243 0.66 0.579825
Target:  5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3'
miRNA:   3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 2287 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 3944 0.66 0.540968
Target:  5'- cGCCgcgGCGGggggGGCgCCGucuccGGCGGCGa -3'
miRNA:   3'- cCGGa--CGCCa---CCGaGGCuc---UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4000 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5'
6353 5' -62.7 NC_001847.1 + 4534 0.67 0.503021
Target:  5'- uGCCUcGCGGcGGCcgcCCGcGGGUGGCGc -3'
miRNA:   3'- cCGGA-CGCCaCCGa--GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4788 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 5040 0.66 0.550609
Target:  5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3'
miRNA:   3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 5366 0.68 0.439657
Target:  5'- cGGCCggGCccaGGCUCCGGcgguccGAGCGGCc -3'
miRNA:   3'- -CCGGa-CGccaCCGAGGCU------CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 5810 0.68 0.475338
Target:  5'- cGCUUGCGcuUGGCgcgCCGGGuGCGuGCAg -3'
miRNA:   3'- cCGGACGCc-ACCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 6681 0.67 0.493712
Target:  5'- aGGCC-GCGGcGGCcggCCGGGcGCGcGCGc -3'
miRNA:   3'- -CCGGaCGCCaCCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 7230 0.67 0.503021
Target:  5'- uGGCgCUGCagcggcuggucgGGUGGCUgugCGGGcGCGGCGg -3'
miRNA:   3'- -CCG-GACG------------CCACCGAg--GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 8473 0.69 0.381092
Target:  5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3'
miRNA:   3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 8601 0.66 0.599487
Target:  5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3'
miRNA:   3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 9898 0.68 0.448436
Target:  5'- aGGCCgucGCGcucGUGGCcgCCGAGuacgcccggcaGGCGGCu -3'
miRNA:   3'- -CCGGa--CGC---CACCGa-GGCUC-----------UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 11660 0.72 0.28053
Target:  5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3'
miRNA:   3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.