miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 134510 0.66 0.599487
Target:  5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 134414 0.66 0.583748
Target:  5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 134192 0.67 0.512405
Target:  5'- cGGCgCaGCGuGgagcGGCgcgcgcgggCCGAGGGCGGCGg -3'
miRNA:   3'- -CCG-GaCGC-Ca---CCGa--------GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133966 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 133921 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 133284 0.67 0.503021
Target:  5'- aGCCgcGCGGUGcGCUCCGgcgcAGAGUGcGUg -3'
miRNA:   3'- cCGGa-CGCCAC-CGAGGC----UCUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 132174 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 132036 0.66 0.579825
Target:  5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 131483 0.67 0.508643
Target:  5'- cGGCCUGCuGGcaUGGCUgcuguacgucgcguUCGuguaccugcgccaGGAGCGGCGc -3'
miRNA:   3'- -CCGGACG-CC--ACCGA--------------GGC-------------UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 130885 0.68 0.466279
Target:  5'- aGGCCgaaGCGG-GGacugaggCgGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCCaCCga-----GgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 130804 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 129322 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 127334 0.71 0.320844
Target:  5'- cGCCgagGCGGccGGCUgCCGcggcaGGGGCGGCGg -3'
miRNA:   3'- cCGGa--CGCCa-CCGA-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 126231 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 126041 1.09 0.000608
Target:  5'- gGGCCUGCGGUGGCUCCGAGAGCGGCAc -3'
miRNA:   3'- -CCGGACGCCACCGAGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 125308 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 124761 0.7 0.365342
Target:  5'- cGGCUcGCGGgcGGCaCCGGGGGgGGCu -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCUCgCCGu -5'
6353 5' -62.7 NC_001847.1 + 124702 0.7 0.357637
Target:  5'- cGGCCaGgGGagccgGGCg-CGGGGGCGGCAg -3'
miRNA:   3'- -CCGGaCgCCa----CCGagGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 123794 0.7 0.350047
Target:  5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3'
miRNA:   3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 123152 0.66 0.599487
Target:  5'- uGCgUGCGGUacGUUCCG-GAGaCGGCGc -3'
miRNA:   3'- cCGgACGCCAc-CGAGGCuCUC-GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.