miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 120774 0.67 0.521861
Target:  5'- cGGCCgcgGCcGUGGCaUCUGcGAGCgucGGCAg -3'
miRNA:   3'- -CCGGa--CGcCACCG-AGGCuCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 120173 0.69 0.422397
Target:  5'- uGCCUGUugcucuggauGGUGGUgcuggCCGcgcGAGCGGCGc -3'
miRNA:   3'- cCGGACG----------CCACCGa----GGCu--CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 118423 0.72 0.27359
Target:  5'- cGCCUGCGGUcucggcgccguggGGCUCCuGcuGGUGGCGg -3'
miRNA:   3'- cCGGACGCCA-------------CCGAGG-CucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 118101 0.69 0.413922
Target:  5'- cGCCcgagcUGCGcGUGuaCUUCGAGGGCGGCGa -3'
miRNA:   3'- cCGG-----ACGC-CACc-GAGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 117035 0.66 0.589642
Target:  5'- uGCCcgGCGGgGGCUcgCCGAGgaGGCGGa- -3'
miRNA:   3'- cCGGa-CGCCaCCGA--GGCUC--UCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 116671 0.77 0.123283
Target:  5'- uGGCCUGCGuGUGGgUCCGgcgcugcGGGcGCGGCAc -3'
miRNA:   3'- -CCGGACGC-CACCgAGGC-------UCU-CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 116423 0.68 0.439657
Target:  5'- gGGCCgcGCGcuugGGCU-CGAGGGCGGUg -3'
miRNA:   3'- -CCGGa-CGCca--CCGAgGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 111414 0.66 0.599487
Target:  5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3'
miRNA:   3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 111286 0.69 0.381092
Target:  5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3'
miRNA:   3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 111082 0.66 0.598501
Target:  5'- gGGCCUG-GGcccGGCUgCgCGAGAaggucgcGCGGCAc -3'
miRNA:   3'- -CCGGACgCCa--CCGA-G-GCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 108426 0.68 0.475338
Target:  5'- cGCCUGCGcguuccuggacGUGGacgCCGAGcuGCGGCu -3'
miRNA:   3'- cCGGACGC-----------CACCga-GGCUCu-CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 107853 0.66 0.550609
Target:  5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3'
miRNA:   3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 107697 0.7 0.350047
Target:  5'- cGCCUGCGGuUGGCggcgCuCGcGGGCgGGCAc -3'
miRNA:   3'- cCGGACGCC-ACCGa---G-GCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 107601 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 106813 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 105682 0.7 0.327971
Target:  5'- cGGCC-GCGGgcGGCgcuucggCCGcGGGCGGCGc -3'
miRNA:   3'- -CCGGaCGCCa-CCGa------GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 105100 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 105056 0.66 0.579825
Target:  5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3'
miRNA:   3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 104534 0.66 0.569068
Target:  5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3'
miRNA:   3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103790 0.73 0.238147
Target:  5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3'
miRNA:   3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.