miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 103410 0.68 0.457311
Target:  5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103232 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103139 0.67 0.530428
Target:  5'- gGGCCgccgGCGcgcgaagguccucGcGGCU-CGAGGGCGGCGu -3'
miRNA:   3'- -CCGGa---CGC-------------CaCCGAgGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 102686 0.68 0.457311
Target:  5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3'
miRNA:   3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 101406 0.67 0.516179
Target:  5'- cGGCaaucgGgGGUcucgucucccgccgcGGCUCCGAGAGCuggggGGCGc -3'
miRNA:   3'- -CCGga---CgCCA---------------CCGAGGCUCUCG-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 100853 0.68 0.457311
Target:  5'- gGGCCggaGCGccGGCccgCCGGGGGuCGGCGg -3'
miRNA:   3'- -CCGGa--CGCcaCCGa--GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 100598 0.7 0.373161
Target:  5'- cGGCCUGUGGccccaaGcGC-CCGGcGGGCGGCGc -3'
miRNA:   3'- -CCGGACGCCa-----C-CGaGGCU-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 99799 0.69 0.397289
Target:  5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3'
miRNA:   3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 98887 0.68 0.448436
Target:  5'- cGCCUG-GGcGGCccaggCCGGGAGCucGGCAa -3'
miRNA:   3'- cCGGACgCCaCCGa----GGCUCUCG--CCGU- -5'
6353 5' -62.7 NC_001847.1 + 98839 0.66 0.550609
Target:  5'- cGGCg-GCGGUGGCagCGGcgcgcgaacuucGuGCGGCAa -3'
miRNA:   3'- -CCGgaCGCCACCGagGCU------------CuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 98782 0.66 0.559331
Target:  5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96918 0.71 0.305577
Target:  5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3'
miRNA:   3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96825 0.66 0.573952
Target:  5'- -aCgUGCGGUaauugggggggaaagGGCgcgUCGGGGGCGGCGg -3'
miRNA:   3'- ccGgACGCCA---------------CCGa--GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96460 0.66 0.579825
Target:  5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3'
miRNA:   3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96405 0.69 0.413922
Target:  5'- gGGCCgGCGGcGGCaauggCgGGGccGGCGGCAg -3'
miRNA:   3'- -CCGGaCGCCaCCGa----GgCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96363 0.78 0.11172
Target:  5'- gGGCCgGCGGUGGCaauggcggggCCGGcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCACCGa---------GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96300 0.74 0.197425
Target:  5'- gGGCCggcgGCGGcaaUGGCggggCCGGcGGCGGCAa -3'
miRNA:   3'- -CCGGa---CGCC---ACCGa---GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95910 0.68 0.466279
Target:  5'- cGCCUGaCGGUGGUggaacgagcUCUGAGccCGGCGc -3'
miRNA:   3'- cCGGAC-GCCACCG---------AGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95774 0.66 0.579825
Target:  5'- gGGCC-GCucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGaCGccACCGaGgCUCUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.