Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 103410 | 0.68 | 0.457311 |
Target: 5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3' miRNA: 3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 103232 | 0.68 | 0.439657 |
Target: 5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3' miRNA: 3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 103139 | 0.67 | 0.530428 |
Target: 5'- gGGCCgccgGCGcgcgaagguccucGcGGCU-CGAGGGCGGCGu -3' miRNA: 3'- -CCGGa---CGC-------------CaCCGAgGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 102686 | 0.68 | 0.457311 |
Target: 5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3' miRNA: 3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 102645 | 0.67 | 0.493712 |
Target: 5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3' miRNA: 3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 101406 | 0.67 | 0.516179 |
Target: 5'- cGGCaaucgGgGGUcucgucucccgccgcGGCUCCGAGAGCuggggGGCGc -3' miRNA: 3'- -CCGga---CgCCA---------------CCGAGGCUCUCG-----CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 100853 | 0.68 | 0.457311 |
Target: 5'- gGGCCggaGCGccGGCccgCCGGGGGuCGGCGg -3' miRNA: 3'- -CCGGa--CGCcaCCGa--GGCUCUC-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 100598 | 0.7 | 0.373161 |
Target: 5'- cGGCCUGUGGccccaaGcGC-CCGGcGGGCGGCGc -3' miRNA: 3'- -CCGGACGCCa-----C-CGaGGCU-CUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 99799 | 0.69 | 0.397289 |
Target: 5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3' miRNA: 3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 98887 | 0.68 | 0.448436 |
Target: 5'- cGCCUG-GGcGGCccaggCCGGGAGCucGGCAa -3' miRNA: 3'- cCGGACgCCaCCGa----GGCUCUCG--CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 98839 | 0.66 | 0.550609 |
Target: 5'- cGGCg-GCGGUGGCagCGGcgcgcgaacuucGuGCGGCAa -3' miRNA: 3'- -CCGgaCGCCACCGagGCU------------CuCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 98782 | 0.66 | 0.559331 |
Target: 5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3' miRNA: 3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96918 | 0.71 | 0.305577 |
Target: 5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3' miRNA: 3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96825 | 0.66 | 0.573952 |
Target: 5'- -aCgUGCGGUaauugggggggaaagGGCgcgUCGGGGGCGGCGg -3' miRNA: 3'- ccGgACGCCA---------------CCGa--GGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96460 | 0.66 | 0.579825 |
Target: 5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3' miRNA: 3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96405 | 0.69 | 0.413922 |
Target: 5'- gGGCCgGCGGcGGCaauggCgGGGccGGCGGCAg -3' miRNA: 3'- -CCGGaCGCCaCCGa----GgCUC--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96363 | 0.78 | 0.11172 |
Target: 5'- gGGCCgGCGGUGGCaauggcggggCCGGcGGCGGCAa -3' miRNA: 3'- -CCGGaCGCCACCGa---------GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96300 | 0.74 | 0.197425 |
Target: 5'- gGGCCggcgGCGGcaaUGGCggggCCGGcGGCGGCAa -3' miRNA: 3'- -CCGGa---CGCC---ACCGa---GGCUcUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95910 | 0.68 | 0.466279 |
Target: 5'- cGCCUGaCGGUGGUggaacgagcUCUGAGccCGGCGc -3' miRNA: 3'- cCGGAC-GCCACCG---------AGGCUCucGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95774 | 0.66 | 0.579825 |
Target: 5'- gGGCC-GCucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGaCGccACCGaGgCUCUCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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