miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 96460 0.66 0.579825
Target:  5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3'
miRNA:   3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59855 0.66 0.550609
Target:  5'- cGGCCagGCGc-GGUcgCCGAGGGcCGGCGc -3'
miRNA:   3'- -CCGGa-CGCcaCCGa-GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46911 0.66 0.57102
Target:  5'- aGGCUUcGgGGggcgcgucgggcccgGGCUCCGGGccgcguGCGGCGa -3'
miRNA:   3'- -CCGGA-CgCCa--------------CCGAGGCUCu-----CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 23418 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95630 0.66 0.540006
Target:  5'- cGCUgugGCGGgccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- cCGGa--CGCC-------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 3944 0.66 0.540968
Target:  5'- cGCCgcgGCGGggggGGCgCCGucuccGGCGGCGa -3'
miRNA:   3'- cCGGa--CGCCa---CCGaGGCuc---UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 71854 0.66 0.540968
Target:  5'- cGCCUccccaGCGGUGGaagcggCCGcGAGCGcGCGg -3'
miRNA:   3'- cCGGA-----CGCCACCga----GGCuCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 5040 0.66 0.550609
Target:  5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3'
miRNA:   3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95666 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95720 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 98782 0.66 0.559331
Target:  5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34129 0.66 0.560303
Target:  5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 104534 0.66 0.569068
Target:  5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3'
miRNA:   3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32782 0.66 0.570044
Target:  5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3'
miRNA:   3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 6681 0.67 0.493712
Target:  5'- aGGCC-GCGGcGGCcggCCGGGcGCGcGCGc -3'
miRNA:   3'- -CCGGaCGCCaCCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 4534 0.67 0.503021
Target:  5'- uGCCUcGCGGcGGCcgcCCGcGGGUGGCGc -3'
miRNA:   3'- cCGGA-CGCCaCCGa--GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5'
6353 5' -62.7 NC_001847.1 + 51516 0.67 0.531383
Target:  5'- cGCCggUGCGGcgccGGCaggCGGGGGCGGCGc -3'
miRNA:   3'- cCGG--ACGCCa---CCGag-GCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46333 0.67 0.531383
Target:  5'- cGGCCgcccGCGG-GGC-CgCGucGGCGGCAu -3'
miRNA:   3'- -CCGGa---CGCCaCCGaG-GCucUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.