Results 41 - 60 of 209 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 133966 | 0.7 | 0.335214 |
Target: 5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3' miRNA: 3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 51570 | 0.7 | 0.345548 |
Target: 5'- gGGCUcGCGGgcgccuaccagaaGC-CCGAGAGCGGCGg -3' miRNA: 3'- -CCGGaCGCCac-----------CGaGGCUCUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 123794 | 0.7 | 0.350047 |
Target: 5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3' miRNA: 3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 85185 | 0.7 | 0.350047 |
Target: 5'- cGGCCUGCGcGUacucGGCgCCGGGcAGCccGGCGg -3' miRNA: 3'- -CCGGACGC-CA----CCGaGGCUC-UCG--CCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 124761 | 0.7 | 0.365342 |
Target: 5'- cGGCUcGCGGgcGGCaCCGGGGGgGGCu -3' miRNA: 3'- -CCGGaCGCCa-CCGaGGCUCUCgCCGu -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 36983 | 0.7 | 0.365342 |
Target: 5'- cGGCgaGCGGgcccGCgCCGAGcGGCGGCGg -3' miRNA: 3'- -CCGgaCGCCac--CGaGGCUC-UCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 37465 | 0.7 | 0.357637 |
Target: 5'- gGGCCUGCGuUGGCcgggcCCGgccuGGcAGCGGCGg -3' miRNA: 3'- -CCGGACGCcACCGa----GGC----UC-UCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 100598 | 0.7 | 0.373161 |
Target: 5'- cGGCCUGUGGccccaaGcGC-CCGGcGGGCGGCGc -3' miRNA: 3'- -CCGGACGCCa-----C-CGaGGCU-CUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 62924 | 0.7 | 0.373161 |
Target: 5'- gGGCCcGCGGgcGGCUCCucgucGGGgGGCAg -3' miRNA: 3'- -CCGGaCGCCa-CCGAGGcu---CUCgCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 31145 | 0.7 | 0.373161 |
Target: 5'- -uUCUGCGGcUGGcCUUCGcGGGCGGCGu -3' miRNA: 3'- ccGGACGCC-ACC-GAGGCuCUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 67615 | 0.7 | 0.327971 |
Target: 5'- cGCCUGCGGaaaaaGGCggcgCCGgcGGAGaCGGCGg -3' miRNA: 3'- cCGGACGCCa----CCGa---GGC--UCUC-GCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 32936 | 0.7 | 0.327971 |
Target: 5'- aGGCCgGCGGcGGggCCGGGGG-GGCGg -3' miRNA: 3'- -CCGGaCGCCaCCgaGGCUCUCgCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 105682 | 0.7 | 0.327971 |
Target: 5'- cGGCC-GCGGgcGGCgcuucggCCGcGGGCGGCGc -3' miRNA: 3'- -CCGGaCGCCa-CCGa------GGCuCUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 14326 | 0.7 | 0.350047 |
Target: 5'- uGCUcGCGGUGGggCCGGGcgugguGGCGGCGc -3' miRNA: 3'- cCGGaCGCCACCgaGGCUC------UCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 124702 | 0.7 | 0.357637 |
Target: 5'- cGGCCaGgGGagccgGGCg-CGGGGGCGGCAg -3' miRNA: 3'- -CCGGaCgCCa----CCGagGCUCUCGCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 8473 | 0.69 | 0.381092 |
Target: 5'- gGGCCgGgGGcGGCgcucggCCGGGGGCGGg- -3' miRNA: 3'- -CCGGaCgCCaCCGa-----GGCUCUCGCCgu -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 12944 | 0.69 | 0.389135 |
Target: 5'- cGUCgUGCGGUggggcGGCgggCCGGGGGUGGCc -3' miRNA: 3'- cCGG-ACGCCA-----CCGa--GGCUCUCGCCGu -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 42090 | 0.69 | 0.4114 |
Target: 5'- cGGCCUcGCGGUgccggcaccguccaGGCgCCGGGGGCcGCu -3' miRNA: 3'- -CCGGA-CGCCA--------------CCGaGGCUCUCGcCGu -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 32673 | 0.69 | 0.404721 |
Target: 5'- uGGCCUGCauccgccGGUGGCU---GGAGgGGCGc -3' miRNA: 3'- -CCGGACG-------CCACCGAggcUCUCgCCGU- -5' |
|||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 27991 | 0.69 | 0.405552 |
Target: 5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3' miRNA: 3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home