miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 29361 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 29481 0.67 0.531383
Target:  5'- cGGCCgagGCGGcacgcuCUCCGGccgcGGGCGGCGc -3'
miRNA:   3'- -CCGGa--CGCCacc---GAGGCU----CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 30060 0.67 0.521861
Target:  5'- uGCCggcGCGGUGGCgcggCUGGGAGU-GCu -3'
miRNA:   3'- cCGGa--CGCCACCGa---GGCUCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 31108 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 31145 0.7 0.373161
Target:  5'- -uUCUGCGGcUGGcCUUCGcGGGCGGCGu -3'
miRNA:   3'- ccGGACGCC-ACC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31153 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 31601 0.66 0.583748
Target:  5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31697 0.66 0.599487
Target:  5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 31793 0.66 0.589642
Target:  5'- cGGCCUGCcuuacggccGUGGCg--GuGGGCGGCGc -3'
miRNA:   3'- -CCGGACGc--------CACCGaggCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31919 0.67 0.521861
Target:  5'- cGGCC-GCGGccgcGGCUCCGc-GGCGGg- -3'
miRNA:   3'- -CCGGaCGCCa---CCGAGGCucUCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 32673 0.69 0.404721
Target:  5'- uGGCCUGCauccgccGGUGGCU---GGAGgGGCGc -3'
miRNA:   3'- -CCGGACG-------CCACCGAggcUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32782 0.66 0.570044
Target:  5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3'
miRNA:   3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5'
6353 5' -62.7 NC_001847.1 + 32836 0.74 0.207122
Target:  5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3'
miRNA:   3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32936 0.7 0.327971
Target:  5'- aGGCCgGCGGcGGggCCGGGGG-GGCGg -3'
miRNA:   3'- -CCGGaCGCCaCCgaGGCUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32985 0.72 0.255956
Target:  5'- cGCCgggGCGGgcagGGCggCCG-GAGCGGCc -3'
miRNA:   3'- cCGGa--CGCCa---CCGa-GGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 33203 0.67 0.512405
Target:  5'- cGGCCaUGaCGGacuacgugaUGGCgaugcuggCCGAGuGCGGCu -3'
miRNA:   3'- -CCGG-AC-GCC---------ACCGa-------GGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 33342 0.69 0.405552
Target:  5'- cGGCCUG-GGUGGCgcugcugCaCGAGGcGCaGGCGg -3'
miRNA:   3'- -CCGGACgCCACCGa------G-GCUCU-CG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 33523 0.68 0.478986
Target:  5'- cGCCgccGCGGaGGCgCCGGGcgcgggcgccgaagaGGCGGCAg -3'
miRNA:   3'- cCGGa--CGCCaCCGaGGCUC---------------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 33787 0.66 0.588658
Target:  5'- gGGCUUcGCGG-GGCUgcgcgcggcgcCCGgcgcgcuGGAGCGGCu -3'
miRNA:   3'- -CCGGA-CGCCaCCGA-----------GGC-------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34075 0.67 0.484483
Target:  5'- cGGCCcccGCGGcGGCcCCGGGGcCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGaGGCUCUcGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.