miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 12470 0.68 0.448436
Target:  5'- aGCCUccGCGGcuucccgcgUGGCggCGGGGGCGGCc -3'
miRNA:   3'- cCGGA--CGCC---------ACCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 12944 0.69 0.389135
Target:  5'- cGUCgUGCGGUggggcGGCgggCCGGGGGUGGCc -3'
miRNA:   3'- cCGG-ACGCCA-----CCGa--GGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 13242 0.66 0.599487
Target:  5'- uGGCCaGCGG-GGC-CaCGcGGGCGGUu -3'
miRNA:   3'- -CCGGaCGCCaCCGaG-GCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 13302 0.69 0.378701
Target:  5'- aGCaCUcGCGGUcgucgaggcagacgGGCUCCGGcacGGGCGGCGa -3'
miRNA:   3'- cCG-GA-CGCCA--------------CCGAGGCU---CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 14208 0.68 0.457311
Target:  5'- gGGCUgGCGGUcaGGCcggCCGGGGGCguggugagGGCAa -3'
miRNA:   3'- -CCGGaCGCCA--CCGa--GGCUCUCG--------CCGU- -5'
6353 5' -62.7 NC_001847.1 + 14326 0.7 0.350047
Target:  5'- uGCUcGCGGUGGggCCGGGcgugguGGCGGCGc -3'
miRNA:   3'- cCGGaCGCCACCgaGGCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 15011 0.68 0.457311
Target:  5'- cGGCC-GCGGUGGggCCGcgcGAGCcGCGg -3'
miRNA:   3'- -CCGGaCGCCACCgaGGCu--CUCGcCGU- -5'
6353 5' -62.7 NC_001847.1 + 18519 0.68 0.467181
Target:  5'- aGGCCaGCGcugcgGGCgcgccgccguccgcgCCGcAGAGCGGCAg -3'
miRNA:   3'- -CCGGaCGCca---CCGa--------------GGC-UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 19802 0.71 0.320844
Target:  5'- cGGCggagGCGGUGGCggUGgcGGGGCGGCAg -3'
miRNA:   3'- -CCGga--CGCCACCGagGC--UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 21949 0.72 0.28053
Target:  5'- cGGCUcGCGGcGGCaCCGGGGGgGGCu -3'
miRNA:   3'- -CCGGaCGCCaCCGaGGCUCUCgCCGu -5'
6353 5' -62.7 NC_001847.1 + 22495 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 23418 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24325 0.67 0.531383
Target:  5'- aGCgaGCGGUGGCgcgccacgCCGcGcGCGGCc -3'
miRNA:   3'- cCGgaCGCCACCGa-------GGCuCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 26509 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 26992 0.66 0.550609
Target:  5'- cGUCUGCGGcGGCgcgguugCCGuacucGGCGGCGc -3'
miRNA:   3'- cCGGACGCCaCCGa------GGCuc---UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 27518 0.69 0.405552
Target:  5'- cGCCgcgGCGGcGGCggggacgcCCGAGAacgGCGGCGc -3'
miRNA:   3'- cCGGa--CGCCaCCGa-------GGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 27991 0.69 0.405552
Target:  5'- cGGCCgggGCGGaGGCggccgcggCCGA-AGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCUcUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 28072 0.68 0.466279
Target:  5'- aGGCCgaaGCGG-GGacugaggCgGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCCaCCga-----GgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 29223 0.66 0.579825
Target:  5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.