miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 34094 0.69 0.422397
Target:  5'- cGGCC-GCcGUGGCUCgCGc-GGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34129 0.66 0.560303
Target:  5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34130 0.69 0.397289
Target:  5'- cGCCUgccGCGGUGGCcgCCGcggcGAGCGcGCu -3'
miRNA:   3'- cCGGA---CGCCACCGa-GGCu---CUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 34178 0.68 0.457311
Target:  5'- aGGCgCUGCGGg----CCGGGGGCGcGCAc -3'
miRNA:   3'- -CCG-GACGCCaccgaGGCUCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 34394 0.7 0.335214
Target:  5'- cGGCCgccgccGCGGcagacgcGGCgCUGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGCCa------CCGaGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34649 0.66 0.560303
Target:  5'- aGGCCgaGCGGc-GCgCCGAGggGGCGGCc -3'
miRNA:   3'- -CCGGa-CGCCacCGaGGCUC--UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 35537 0.68 0.430976
Target:  5'- cGGCgagGUcGUGGCUgCCGAG-GCGGCGc -3'
miRNA:   3'- -CCGga-CGcCACCGA-GGCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 35967 0.67 0.484483
Target:  5'- cGGCgCUGCuGUGGCUCcCGccGGCuGGCGc -3'
miRNA:   3'- -CCG-GACGcCACCGAG-GCucUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 36983 0.7 0.365342
Target:  5'- cGGCgaGCGGgcccGCgCCGAGcGGCGGCGg -3'
miRNA:   3'- -CCGgaCGCCac--CGaGGCUC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37109 0.66 0.599487
Target:  5'- cGGCCcGCuGGUGuucauGCUCUGGG-GCGcGCAc -3'
miRNA:   3'- -CCGGaCG-CCAC-----CGAGGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 37150 0.73 0.222437
Target:  5'- gGGCCUuuGG-GGCggCCGGGAaGCGGCAc -3'
miRNA:   3'- -CCGGAcgCCaCCGa-GGCUCU-CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37465 0.7 0.357637
Target:  5'- gGGCCUGCGuUGGCcgggcCCGgccuGGcAGCGGCGg -3'
miRNA:   3'- -CCGGACGCcACCGa----GGC----UC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37583 0.7 0.335214
Target:  5'- uGGCCgcUGCGGcugcGGCggCCGGGGGcCGGCc -3'
miRNA:   3'- -CCGG--ACGCCa---CCGa-GGCUCUC-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 42090 0.69 0.4114
Target:  5'- cGGCCUcGCGGUgccggcaccguccaGGCgCCGGGGGCcGCu -3'
miRNA:   3'- -CCGGA-CGCCA--------------CCGaGGCUCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 43430 0.68 0.430976
Target:  5'- gGGCCUcgcgucgcGCGGU-GC-CCGAGAGCGaaGCGg -3'
miRNA:   3'- -CCGGA--------CGCCAcCGaGGCUCUCGC--CGU- -5'
6353 5' -62.7 NC_001847.1 + 46201 0.66 0.560303
Target:  5'- cGGCCgGCGGcGGCcgCCGccGGGcCGGCc -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGCu-CUC-GCCGu -5'
6353 5' -62.7 NC_001847.1 + 46333 0.67 0.531383
Target:  5'- cGGCCgcccGCGG-GGC-CgCGucGGCGGCAu -3'
miRNA:   3'- -CCGGa---CGCCaCCGaG-GCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46514 0.71 0.286959
Target:  5'- uGCCaGCGGcagcGCUCgGGGGGCGGCGg -3'
miRNA:   3'- cCGGaCGCCac--CGAGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46911 0.66 0.57102
Target:  5'- aGGCUUcGgGGggcgcgucgggcccgGGCUCCGGGccgcguGCGGCGa -3'
miRNA:   3'- -CCGGA-CgCCa--------------CCGAGGCUCu-----CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.