miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 69375 0.68 0.475338
Target:  5'- cGGUCUuugcgGCGGUGGCgCUGccGGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCACCGaGGCucUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 85782 0.71 0.313834
Target:  5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3'
miRNA:   3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 103232 0.68 0.439657
Target:  5'- gGGCCcgggGCGGgcgGGCggCGGcGGCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCa--CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54425 0.68 0.448436
Target:  5'- uGGCCUcgGCGGcccgGGCagagaCGAGGGgGGCGg -3'
miRNA:   3'- -CCGGA--CGCCa---CCGag---GCUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 102686 0.68 0.457311
Target:  5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3'
miRNA:   3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96918 0.71 0.305577
Target:  5'- cGGCCgcguagaggcgcGCGGcccgGGcCUCCGcGGGCGGCAg -3'
miRNA:   3'- -CCGGa-----------CGCCa---CC-GAGGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133966 0.7 0.335214
Target:  5'- cGGCCgcgGCGGUGGCcuUCUGc--GCGGCc -3'
miRNA:   3'- -CCGGa--CGCCACCG--AGGCucuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 99799 0.69 0.397289
Target:  5'- cGCCUGUGGUgcGGggUCG-GAGCGGCc -3'
miRNA:   3'- cCGGACGCCA--CCgaGGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 27518 0.69 0.405552
Target:  5'- cGCCgcgGCGGcGGCggggacgcCCGAGAacgGCGGCGc -3'
miRNA:   3'- cCGGa--CGCCaCCGa-------GGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 123794 0.7 0.350047
Target:  5'- gGGCCUGCGc-GGCggCGGcAGCGGCAg -3'
miRNA:   3'- -CCGGACGCcaCCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59545 0.67 0.484483
Target:  5'- uGGCagGCGGUgggGGCggCGGGGGCGGUg -3'
miRNA:   3'- -CCGgaCGCCA---CCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 129322 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 54578 0.66 0.540968
Target:  5'- cGGCCccGCGGgcugGGCggCGcuGGCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCa---CCGagGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58668 0.66 0.550609
Target:  5'- cGCUUGCGGcGGUUggGcGGGCGGCAg -3'
miRNA:   3'- cCGGACGCCaCCGAggCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 72895 0.67 0.521861
Target:  5'- gGGCagCUGCaGGUGGCgcgccaCGAGgcggucGGCGGCGu -3'
miRNA:   3'- -CCG--GACG-CCACCGag----GCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 53852 0.68 0.475338
Target:  5'- cGGCgCUgGCGGcgcUGGCggcgCCGAccgccgcggGGGCGGCGg -3'
miRNA:   3'- -CCG-GA-CGCC---ACCGa---GGCU---------CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.