Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 8601 | 0.66 | 0.599487 |
Target: 5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3' miRNA: 3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 31697 | 0.66 | 0.599487 |
Target: 5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3' miRNA: 3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 123152 | 0.66 | 0.599487 |
Target: 5'- uGCgUGCGGUacGUUCCG-GAGaCGGCGc -3' miRNA: 3'- cCGgACGCCAc-CGAGGCuCUC-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 13242 | 0.66 | 0.599487 |
Target: 5'- uGGCCaGCGG-GGC-CaCGcGGGCGGUu -3' miRNA: 3'- -CCGGaCGCCaCCGaG-GCuCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 37109 | 0.66 | 0.599487 |
Target: 5'- cGGCCcGCuGGUGuucauGCUCUGGG-GCGcGCAc -3' miRNA: 3'- -CCGGaCG-CCAC-----CGAGGCUCuCGC-CGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32782 | 0.66 | 0.570044 |
Target: 5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3' miRNA: 3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 23418 | 0.66 | 0.570044 |
Target: 5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3' miRNA: 3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 73498 | 0.67 | 0.521861 |
Target: 5'- cGGCC-GCGGUGGCggcgCUGcAGuccAGCgGGCGc -3' miRNA: 3'- -CCGGaCGCCACCGa---GGC-UC---UCG-CCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 103139 | 0.67 | 0.530428 |
Target: 5'- gGGCCgccgGCGcgcgaagguccucGcGGCU-CGAGGGCGGCGu -3' miRNA: 3'- -CCGGa---CGC-------------CaCCGAgGCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 46333 | 0.67 | 0.531383 |
Target: 5'- cGGCCgcccGCGG-GGC-CgCGucGGCGGCAu -3' miRNA: 3'- -CCGGa---CGCCaCCGaG-GCucUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 51516 | 0.67 | 0.531383 |
Target: 5'- cGCCggUGCGGcgccGGCaggCGGGGGCGGCGc -3' miRNA: 3'- cCGG--ACGCCa---CCGag-GCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95630 | 0.66 | 0.540006 |
Target: 5'- cGCUgugGCGGgccgcucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- cCGGa--CGCC-------ACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 3944 | 0.66 | 0.540968 |
Target: 5'- cGCCgcgGCGGggggGGCgCCGucuccGGCGGCGa -3' miRNA: 3'- cCGGa--CGCCa---CCGaGGCuc---UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 71854 | 0.66 | 0.540968 |
Target: 5'- cGCCUccccaGCGGUGGaagcggCCGcGAGCGcGCGg -3' miRNA: 3'- cCGGA-----CGCCACCga----GGCuCUCGC-CGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 5040 | 0.66 | 0.550609 |
Target: 5'- gGGCgaccgGCGGcGGCUCCGAcGGGacggaCGGCGg -3' miRNA: 3'- -CCGga---CGCCaCCGAGGCU-CUC-----GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95666 | 0.66 | 0.551576 |
Target: 5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95720 | 0.66 | 0.551576 |
Target: 5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 98782 | 0.66 | 0.559331 |
Target: 5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3' miRNA: 3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34129 | 0.66 | 0.560303 |
Target: 5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3' miRNA: 3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 104534 | 0.66 | 0.569068 |
Target: 5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3' miRNA: 3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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