miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 82961 0.67 0.503021
Target:  5'- aGGCCgccugcgaucUGUGGUGGCugcUCCGgcGGAGCcuGGCc -3'
miRNA:   3'- -CCGG----------ACGCCACCG---AGGC--UCUCG--CCGu -5'
6353 5' -62.7 NC_001847.1 + 7230 0.67 0.503021
Target:  5'- uGGCgCUGCagcggcuggucgGGUGGCUgugCGGGcGCGGCGg -3'
miRNA:   3'- -CCG-GACG------------CCACCGAg--GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 2287 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5'
6353 5' -62.7 NC_001847.1 + 6681 0.67 0.493712
Target:  5'- aGGCC-GCGGcGGCcggCCGGGcGCGcGCGc -3'
miRNA:   3'- -CCGGaCGCCaCCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 105100 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34075 0.67 0.484483
Target:  5'- cGGCCcccGCGGcGGCcCCGGGGcCGGCc -3'
miRNA:   3'- -CCGGa--CGCCaCCGaGGCUCUcGCCGu -5'
6353 5' -62.7 NC_001847.1 + 29361 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 4000 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 57987 0.67 0.484483
Target:  5'- aGGaCCggcGCGGUGGCggCGcAG-GCGGCGg -3'
miRNA:   3'- -CC-GGa--CGCCACCGagGC-UCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 35967 0.67 0.484483
Target:  5'- cGGCgCUGCuGUGGCUCcCGccGGCuGGCGc -3'
miRNA:   3'- -CCG-GACGcCACCGAG-GCucUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 22495 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 132174 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 106813 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 125308 0.67 0.484483
Target:  5'- aGGCUgGCcGUGGCUCaUGGcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGcCACCGAG-GCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59545 0.67 0.484483
Target:  5'- uGGCagGCGGUgggGGCggCGGGGGCGGUg -3'
miRNA:   3'- -CCGgaCGCCA---CCGagGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 80274 0.67 0.483565
Target:  5'- gGGCCUccuucaugaaGCGGUgcgcgucaaagguGGCgUCCGAGGcGCGGUu -3'
miRNA:   3'- -CCGGA----------CGCCA-------------CCG-AGGCUCU-CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 33523 0.68 0.478986
Target:  5'- cGCCgccGCGGaGGCgCCGGGcgcgggcgccgaagaGGCGGCAg -3'
miRNA:   3'- cCGGa--CGCCaCCGaGGCUC---------------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 108426 0.68 0.475338
Target:  5'- cGCCUGCGcguuccuggacGUGGacgCCGAGcuGCGGCu -3'
miRNA:   3'- cCGGACGC-----------CACCga-GGCUCu-CGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.