miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 9898 0.68 0.448436
Target:  5'- aGGCCgucGCGcucGUGGCcgCCGAGuacgcccggcaGGCGGCu -3'
miRNA:   3'- -CCGGa--CGC---CACCGa-GGCUC-----------UCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 54425 0.68 0.448436
Target:  5'- uGGCCUcgGCGGcccgGGCagagaCGAGGGgGGCGg -3'
miRNA:   3'- -CCGGA--CGCCa---CCGag---GCUCUCgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 98887 0.68 0.448436
Target:  5'- cGCCUG-GGcGGCccaggCCGGGAGCucGGCAa -3'
miRNA:   3'- cCGGACgCCaCCGa----GGCUCUCG--CCGU- -5'
6353 5' -62.7 NC_001847.1 + 79561 0.68 0.448436
Target:  5'- gGGCUcGCGGggGGCgCCGGGcucGCGGCc -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 34178 0.68 0.457311
Target:  5'- aGGCgCUGCGGg----CCGGGGGCGcGCAc -3'
miRNA:   3'- -CCG-GACGCCaccgaGGCUCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 102686 0.68 0.457311
Target:  5'- gGGCgggGCGGgggcagGGCgCCGGGcgGGCGGCGa -3'
miRNA:   3'- -CCGga-CGCCa-----CCGaGGCUC--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 51391 0.68 0.457311
Target:  5'- aGGCC-GCGGUcgcGGCgCCGAaccuuGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCA---CCGaGGCUcu---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103410 0.68 0.457311
Target:  5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 15011 0.68 0.457311
Target:  5'- cGGCC-GCGGUGGggCCGcgcGAGCcGCGg -3'
miRNA:   3'- -CCGGaCGCCACCgaGGCu--CUCGcCGU- -5'
6353 5' -62.7 NC_001847.1 + 107601 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 100853 0.68 0.457311
Target:  5'- gGGCCggaGCGccGGCccgCCGGGGGuCGGCGg -3'
miRNA:   3'- -CCGGa--CGCcaCCGa--GGCUCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 14208 0.68 0.457311
Target:  5'- gGGCUgGCGGUcaGGCcggCCGGGGGCguggugagGGCAa -3'
miRNA:   3'- -CCGGaCGCCA--CCGa--GGCUCUCG--------CCGU- -5'
6353 5' -62.7 NC_001847.1 + 4788 0.68 0.457311
Target:  5'- cGGCCgugggugcgUGCGGUGGC-CUGGGGGagacggGGUAg -3'
miRNA:   3'- -CCGG---------ACGCCACCGaGGCUCUCg-----CCGU- -5'
6353 5' -62.7 NC_001847.1 + 53808 0.68 0.457311
Target:  5'- aGGUCUGCGcccccUGGCgcgCCG-GAGCGGgGg -3'
miRNA:   3'- -CCGGACGCc----ACCGa--GGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 597 0.68 0.457311
Target:  5'- uGGCCcuccGCGGccGCUCCGc-AGCGGCGc -3'
miRNA:   3'- -CCGGa---CGCCacCGAGGCucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59500 0.68 0.465378
Target:  5'- cGCCcGCGccuccGGCUCCGgcaucgccgucguGGGGCGGCAu -3'
miRNA:   3'- cCGGaCGCca---CCGAGGC-------------UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95910 0.68 0.466279
Target:  5'- cGCCUGaCGGUGGUggaacgagcUCUGAGccCGGCGc -3'
miRNA:   3'- cCGGAC-GCCACCG---------AGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 59439 0.68 0.466279
Target:  5'- cGGCCcGCGGcccgUGGC-CCGA--GCGGCu -3'
miRNA:   3'- -CCGGaCGCC----ACCGaGGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 72696 0.68 0.466279
Target:  5'- aGGCCggggagaGCGGccGC-CCGGuGGGCGGCAg -3'
miRNA:   3'- -CCGGa------CGCCacCGaGGCU-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 28072 0.68 0.466279
Target:  5'- aGGCCgaaGCGG-GGacugaggCgGGGGGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCCaCCga-----GgCUCUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.