miRNA display CGI


Results 21 - 40 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 57558 0.76 0.18161
Target:  5'- cGGGUgCCGcCGUGCgaGCUCggCCCGCGCg -3'
miRNA:   3'- -UCCG-GGC-GCAUGg-CGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 71723 0.76 0.190638
Target:  5'- cGGCCCGCcggcGCCGCgugCgcUCCCGUGCg -3'
miRNA:   3'- uCCGGGCGca--UGGCGa--Ga-AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 73145 0.75 0.204427
Target:  5'- aGGGCCC-CGcGCCGCUCUUcgggcccauuaugCCCGcCGCg -3'
miRNA:   3'- -UCCGGGcGCaUGGCGAGAA-------------GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 108660 0.75 0.220114
Target:  5'- cGGGgCCGCGgacgaguuuCCGCUC--CCCGCGCu -3'
miRNA:   3'- -UCCgGGCGCau-------GGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32119 0.75 0.223267
Target:  5'- cGGCCCGCccGCCGCcggcgCUgggcgccgccgcgCCCGCGCa -3'
miRNA:   3'- uCCGGGCGcaUGGCGa----GAa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 98170 0.75 0.220114
Target:  5'- cGGGCCCGCucGCCgGCg---CCCGCGCu -3'
miRNA:   3'- -UCCGGGCGcaUGG-CGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3215 0.75 0.220114
Target:  5'- -aGCUCGCGcaGCCGCUCgcgcgccgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCa-UGGCGAGaa------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 106028 0.75 0.220114
Target:  5'- -aGCUCGCGcaGCCGCUCgcgcgccgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCa-UGGCGAGaa------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 89865 0.75 0.200057
Target:  5'- aAGGCCgGCucGCCGCggcgggCUUCgCCGCGCu -3'
miRNA:   3'- -UCCGGgCGcaUGGCGa-----GAAG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 7906 0.75 0.200057
Target:  5'- gGGGCgCGCGgcgGCCGCcgcuUCUUCCCcCGCc -3'
miRNA:   3'- -UCCGgGCGCa--UGGCG----AGAAGGGcGCG- -5'
6356 3' -61.4 NC_001847.1 + 125024 0.75 0.224857
Target:  5'- cGGGCCCgcucgccgcgaagGCGgcuuuccccGCCGCUUgugcUCCCGCGCg -3'
miRNA:   3'- -UCCGGG-------------CGCa--------UGGCGAGa---AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 53418 0.75 0.209879
Target:  5'- gGGGCUggagggCGCGUGCCGCUUccaCCgGCGCg -3'
miRNA:   3'- -UCCGG------GCGCAUGGCGAGaa-GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 42114 0.74 0.230772
Target:  5'- cAGGCgCCGgGgGCCGCU--UCCCGCGUu -3'
miRNA:   3'- -UCCG-GGCgCaUGGCGAgaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 41984 0.74 0.253392
Target:  5'- gGGGCgUCGCG-GCCGCcUUUCCCGCGg -3'
miRNA:   3'- -UCCG-GGCGCaUGGCGaGAAGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 93325 0.74 0.253392
Target:  5'- uGGGaCCCGC--GCCGC-CcgCCCGCGCg -3'
miRNA:   3'- -UCC-GGGCGcaUGGCGaGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3659 0.74 0.247571
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 41857 0.74 0.242428
Target:  5'- cGGCCUGCGcGCCGCcgacaUCgcggcgcgauacggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCaUGGCG-----AGaa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 99107 0.74 0.230772
Target:  5'- -aGCCgCGCGUAgUGCUCgUCCgCGCGCa -3'
miRNA:   3'- ucCGG-GCGCAUgGCGAGaAGG-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 18699 0.74 0.247571
Target:  5'- cGGCCCGCGUcACCGC-CagCgCCGCGg -3'
miRNA:   3'- uCCGGGCGCA-UGGCGaGaaG-GGCGCg -5'
6356 3' -61.4 NC_001847.1 + 107299 0.74 0.253392
Target:  5'- aGGGCCCGCacggggucuCCGCUCaugUCagCCGCGCg -3'
miRNA:   3'- -UCCGGGCGcau------GGCGAGa--AG--GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.