Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6356 | 5' | -53.2 | NC_001847.1 | + | 127025 | 0.66 | 0.961222 |
Target: 5'- -cGCCccuGggGccccGCGCCUGcgcugGCGCCGc -3' miRNA: 3'- gaCGGu--CuuUua--CGCGGACa----UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 49948 | 0.66 | 0.961222 |
Target: 5'- -cGCCGGGcugcccgGCGCCgaGUACGCg- -3' miRNA: 3'- gaCGGUCUuuua---CGCGGa-CAUGCGgc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 49583 | 0.66 | 0.961222 |
Target: 5'- -gGCCGacGGcgGCGCCUGgGCGCa- -3' miRNA: 3'- gaCGGUcuUUuaCGCGGACaUGCGgc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 115134 | 0.66 | 0.961222 |
Target: 5'- -cGCCcuauuGGAAGUGCGCugcuCUGgcgggGCGCCu -3' miRNA: 3'- gaCGGu----CUUUUACGCG----GACa----UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 8601 | 0.66 | 0.961222 |
Target: 5'- -cGCCAGggGcgGCGCUcg---GCCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacaugCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 133131 | 0.66 | 0.961222 |
Target: 5'- gUGCUGGAAAAccUGCGgCUGaagcuaGCGCCu -3' miRNA: 3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 89965 | 0.66 | 0.961222 |
Target: 5'- aCUGCCagcgcgcggcGGAAGcgGUGCUgc-GCGCCGc -3' miRNA: 3'- -GACGG----------UCUUUuaCGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 111414 | 0.66 | 0.961222 |
Target: 5'- -cGCCAGggGcgGCGCUcg---GCCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacaugCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 1053 | 0.66 | 0.961222 |
Target: 5'- -cGCCAGAGcaaGCGgCg--GCGCCGg -3' miRNA: 3'- gaCGGUCUUuuaCGCgGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 109163 | 0.66 | 0.960859 |
Target: 5'- -aGCCAGAGccggccgcGCGCUUGUucccaagGCGUCGg -3' miRNA: 3'- gaCGGUCUUuua-----CGCGGACA-------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 117569 | 0.66 | 0.959005 |
Target: 5'- aCUGCaCGGggG--GCGCgCUGcccggccaaaacgucUGCGCCGg -3' miRNA: 3'- -GACG-GUCuuUuaCGCG-GAC---------------AUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 52690 | 0.66 | 0.95748 |
Target: 5'- -gGCCGGGcccgccGCGCCUGgagccaaGCGCCc -3' miRNA: 3'- gaCGGUCUuuua--CGCGGACa------UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 12046 | 0.66 | 0.95748 |
Target: 5'- -cGCUGGAcgcccUGCGCgCUGcggACGCCGa -3' miRNA: 3'- gaCGGUCUuuu--ACGCG-GACa--UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 30237 | 0.66 | 0.95748 |
Target: 5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3' miRNA: 3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 100848 | 0.66 | 0.95748 |
Target: 5'- -gGCCAGGGccGGaGCGCCggccCGCCGg -3' miRNA: 3'- gaCGGUCUU--UUaCGCGGacauGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 63541 | 0.66 | 0.95748 |
Target: 5'- gCUGCUGGcgc---CGCCUGggccgGCGCCGg -3' miRNA: 3'- -GACGGUCuuuuacGCGGACa----UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 13282 | 0.66 | 0.95748 |
Target: 5'- gUGCCGGcccuGUGCGCgCgcuacgcggGCGCCGg -3' miRNA: 3'- gACGGUCuuu-UACGCG-Gaca------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 89347 | 0.66 | 0.95748 |
Target: 5'- -cGCCGGGcuuUGCGCgCuucggagcugUGUugGCCGa -3' miRNA: 3'- gaCGGUCUuuuACGCG-G----------ACAugCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 98775 | 0.66 | 0.95748 |
Target: 5'- gCUGcCCGGGccgcGGcgGCGCCgcgugGcGCGCCGc -3' miRNA: 3'- -GAC-GGUCU----UUuaCGCGGa----CaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 125430 | 0.66 | 0.95748 |
Target: 5'- -cGCCGGAGGAcccGCGCgUGgcugGCCGg -3' miRNA: 3'- gaCGGUCUUUUa--CGCGgACaug-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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