miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 1053 0.66 0.961222
Target:  5'- -cGCCAGAGcaaGCGgCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUuuaCGCgGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 1359 0.67 0.935098
Target:  5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3'
miRNA:   3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 1643 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 3253 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 3909 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 7857 0.66 0.953498
Target:  5'- -cGCCGGug---GCGCCUGcagagGCgGCCGc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa----UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 8070 0.71 0.765086
Target:  5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8216 0.68 0.906388
Target:  5'- gUGCCAGcAGAAgcagcUGCGCCac-GCGCUGg -3'
miRNA:   3'- gACGGUC-UUUU-----ACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8440 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8601 0.66 0.961222
Target:  5'- -cGCCAGggGcgGCGCUcg---GCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 10542 0.66 0.944799
Target:  5'- -gGCCcGggGAcccGCGCCcGgccgGCGCCGg -3'
miRNA:   3'- gaCGGuCuuUUa--CGCGGaCa---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 11333 0.72 0.684677
Target:  5'- -cGCCAGGAcg-GCGCCUGccGCuGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGACa-UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 11960 0.71 0.775771
Target:  5'- -cGCUAGGGAuggGCGgCUGaGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua-CGCgGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 12046 0.66 0.95748
Target:  5'- -cGCUGGAcgcccUGCGCgCUGcggACGCCGa -3'
miRNA:   3'- gaCGGUCUuuu--ACGCG-GACa--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 12835 0.7 0.830795
Target:  5'- -cGCuUGGGAGAUG-GCCgGUACGCCGc -3'
miRNA:   3'- gaCG-GUCUUUUACgCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 13282 0.66 0.95748
Target:  5'- gUGCCGGcccuGUGCGCgCgcuacgcggGCGCCGg -3'
miRNA:   3'- gACGGUCuuu-UACGCG-Gaca------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 13872 0.71 0.785342
Target:  5'- -gGCgAGggGggGCGCCU-UugGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGAcAugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 14338 0.69 0.839342
Target:  5'- -gGCCGGGcgugguGGcgGCGCCUGcggggaACGCCGc -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGACa-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 14340 0.66 0.953498
Target:  5'- -gGgCAGAGAAgggGUGCCUGc-UGCCGa -3'
miRNA:   3'- gaCgGUCUUUUa--CGCGGACauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 14436 0.71 0.775771
Target:  5'- aCUGCCuc-GAcgGCGCCgggGUGCGCgGc -3'
miRNA:   3'- -GACGGucuUUuaCGCGGa--CAUGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.