Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6356 | 5' | -53.2 | NC_001847.1 | + | 124398 | 1.1 | 0.003768 |
Target: 5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3' miRNA: 3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 34620 | 0.79 | 0.344161 |
Target: 5'- -cGCCgAGGAAGUccgGCGCCUGcGCGCCGa -3' miRNA: 3'- gaCGG-UCUUUUA---CGCGGACaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 39835 | 0.78 | 0.411959 |
Target: 5'- cCUGCCGGcgcc-GCGCCUGgagGCGCCa -3' miRNA: 3'- -GACGGUCuuuuaCGCGGACa--UGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 82597 | 0.78 | 0.411959 |
Target: 5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3' miRNA: 3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 133997 | 0.76 | 0.477619 |
Target: 5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3' miRNA: 3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 31184 | 0.76 | 0.477619 |
Target: 5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3' miRNA: 3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 82100 | 0.76 | 0.507306 |
Target: 5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3' miRNA: 3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 59312 | 0.75 | 0.548039 |
Target: 5'- gUGCCAGGGcGcgGCGCCggcgGCGCCGu -3' miRNA: 3'- gACGGUCUU-UuaCGCGGaca-UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 28381 | 0.74 | 0.610821 |
Target: 5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 131194 | 0.74 | 0.610821 |
Target: 5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 43005 | 0.73 | 0.642546 |
Target: 5'- -cGCCGGggGGgcGCGCCgGgcCGCCGa -3' miRNA: 3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 29563 | 0.73 | 0.642546 |
Target: 5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 132376 | 0.73 | 0.642546 |
Target: 5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 79068 | 0.73 | 0.643603 |
Target: 5'- -cGCCGGAGccgggcgcgugcgacGUGUGCCcGUGCGCCGc -3' miRNA: 3'- gaCGGUCUUu--------------UACGCGGaCAUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 19670 | 0.73 | 0.653115 |
Target: 5'- -cGCCGGAAAcUGCGaCCggGUgcGCGCCGu -3' miRNA: 3'- gaCGGUCUUUuACGC-GGa-CA--UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 45360 | 0.73 | 0.663666 |
Target: 5'- -cGCCAGcgcGAUGacgGCCUcGUACGCCGg -3' miRNA: 3'- gaCGGUCuu-UUACg--CGGA-CAUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 8440 | 0.73 | 0.67419 |
Target: 5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3' miRNA: 3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 111253 | 0.73 | 0.67419 |
Target: 5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3' miRNA: 3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 28980 | 0.73 | 0.67419 |
Target: 5'- -cGCCGGGAAcGUGCGCCaUGcuagagcGCGCCGu -3' miRNA: 3'- gaCGGUCUUU-UACGCGG-ACa------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 11333 | 0.72 | 0.684677 |
Target: 5'- -cGCCAGGAcg-GCGCCUGccGCuGCCGc -3' miRNA: 3'- gaCGGUCUUuuaCGCGGACa-UG-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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