miRNA display CGI


Results 21 - 40 of 464 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 130647 0.7 0.689635
Target:  5'- cGCGGAgaucgGCGAGgACGCCg-GCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUgUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 130516 0.72 0.555816
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 130109 0.66 0.879101
Target:  5'- gGGCuGGGACGAGuacgagaGCGCCCUcGCGCg-- -3'
miRNA:   3'- -UCG-CUUUGCUUg------UGCGGGA-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 130067 0.68 0.787813
Target:  5'- cGGCGAcGCGucGC-CGUCCUGgGCCg- -3'
miRNA:   3'- -UCGCUuUGCu-UGuGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 129715 0.66 0.861982
Target:  5'- gAGCGAGACGcgcggcuaaccGcgcucucacugagcGCGCGgCCUGUGCCg- -3'
miRNA:   3'- -UCGCUUUGC-----------U--------------UGUGCgGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 129256 0.7 0.689635
Target:  5'- uGCGAcGGCGcGGC-CGCCCUGCGCg-- -3'
miRNA:   3'- uCGCU-UUGC-UUGuGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 129027 0.73 0.467374
Target:  5'- cGGCGAGGCGcuCGCGCC--GCGCCUc -3'
miRNA:   3'- -UCGCUUUGCuuGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 128804 0.66 0.879101
Target:  5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3'
miRNA:   3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 128182 0.72 0.525652
Target:  5'- gGGCgGAAGCGccgcCGCGaCCCcGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCuu--GUGC-GGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 127415 0.77 0.287631
Target:  5'- cGCcuccGCGccCGCGCCCUGCGCCUGa -3'
miRNA:   3'- uCGcuu-UGCuuGUGCGGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 127240 0.66 0.879101
Target:  5'- aAGCG--GCGGccgccGCGCGCCCcGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCU-----UGUGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 125485 0.67 0.832124
Target:  5'- cGGCGGGcGCGAGgACGCCCgGCuGCUc- -3'
miRNA:   3'- -UCGCUU-UGCUUgUGCGGGaCG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 125163 0.72 0.555816
Target:  5'- uGGCGAGGCGca-GCGCCUcgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCuugUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 124927 0.85 0.093637
Target:  5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 124269 0.7 0.689635
Target:  5'- aGGCGGucugccugGGCGccCGCGCCCgccGCGCCUc -3'
miRNA:   3'- -UCGCU--------UUGCuuGUGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 124121 1.09 0.002326
Target:  5'- cAGCGAAACGAACACGCCCUGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCGGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 123933 0.67 0.847798
Target:  5'- cGCGAGuaaagGCuGucuaauuuuuuccGCACGCCC-GCGCCUGu -3'
miRNA:   3'- uCGCUU-----UGcU-------------UGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 123632 0.69 0.699829
Target:  5'- cGGcCGggGCG---GCGCCCUuggcugaagGCGCCUGa -3'
miRNA:   3'- -UC-GCuuUGCuugUGCGGGA---------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 122858 0.67 0.840461
Target:  5'- uGCGggGCacccccuuccgGGGCGCGCUCggguggUGCGUCUGu -3'
miRNA:   3'- uCGCuuUG-----------CUUGUGCGGG------ACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 122820 0.76 0.338344
Target:  5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3'
miRNA:   3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.