miRNA display CGI


Results 81 - 100 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 51061 0.73 0.428715
Target:  5'- aGCAGGC-CaccGAGGCgUUCGUGCGCg -3'
miRNA:   3'- aCGUCCGcGguuCUCUG-AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34833 0.73 0.428715
Target:  5'- -cCGGGCGCU-GGAGGCga-GCGCGCa -3'
miRNA:   3'- acGUCCGCGGuUCUCUGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59863 0.73 0.428715
Target:  5'- cGCGGuCGCCGAGGGcCggCGCGCGg -3'
miRNA:   3'- aCGUCcGCGGUUCUCuGaaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 28086 0.73 0.428715
Target:  5'- gUGCuguGGCGCCugcccGGGGC--CGCGCGCg -3'
miRNA:   3'- -ACGu--CCGCGGuu---CUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 77084 0.73 0.437714
Target:  5'- cGCGcGCGCCAAucGGCggccCGCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUUcuCUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34613 0.73 0.437714
Target:  5'- gGCGGcGCGCCGAGGaaguccGGCgccUGCGCGCc -3'
miRNA:   3'- aCGUC-CGCGGUUCU------CUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 73073 0.73 0.437714
Target:  5'- cGCGGGCGCgGA-AGuCgaCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGgUUcUCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 107124 0.73 0.437714
Target:  5'- gUGCAGGCGCUcguAAGcgcGGCacgcCGCGCGCu -3'
miRNA:   3'- -ACGUCCGCGG---UUCu--CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 38124 0.73 0.446819
Target:  5'- gGCGGguGCGCCGGgcaccGAGuCUUCGCGCGg -3'
miRNA:   3'- aCGUC--CGCGGUU-----CUCuGAAGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 36961 0.73 0.446819
Target:  5'- cGCAcGGCuGCCuAGAgGACUggGCGCGCc -3'
miRNA:   3'- aCGU-CCG-CGGuUCU-CUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 63765 0.73 0.446819
Target:  5'- cGCGGGCcagGCCcGGAGACcgCGCGgaCGCg -3'
miRNA:   3'- aCGUCCG---CGGuUCUCUGaaGCGC--GCG- -5'
6357 5' -57.2 NC_001847.1 + 59499 0.73 0.455104
Target:  5'- gGCAGgggguGCGCCGAGGccgcaccGGCUUgGUGCGCu -3'
miRNA:   3'- aCGUC-----CGCGGUUCU-------CUGAAgCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 21324 0.73 0.455104
Target:  5'- cGCgGGGUGCCAAGgccauuguggcgcAGACgaUGCGCGCc -3'
miRNA:   3'- aCG-UCCGCGGUUC-------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 75494 0.73 0.455104
Target:  5'- gGCGGGCGCgAGcGGGCUcaaaagagcgcggUCGCGgGCg -3'
miRNA:   3'- aCGUCCGCGgUUcUCUGA-------------AGCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 85788 0.73 0.45603
Target:  5'- aUGCGGugcGCGUCGAGGGuGCgggCGCGUGCa -3'
miRNA:   3'- -ACGUC---CGCGGUUCUC-UGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52613 0.73 0.45603
Target:  5'- gGC-GGCGCCuuu-GACUUCGgCGCGUg -3'
miRNA:   3'- aCGuCCGCGGuucuCUGAAGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 91935 0.72 0.465342
Target:  5'- gGCAacGGCGCCGAGcaauccACgaggCGCGCGCa -3'
miRNA:   3'- aCGU--CCGCGGUUCuc----UGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51826 0.72 0.465342
Target:  5'- aUGgAGGCGCCAAGcGcCccCGUGCGCg -3'
miRNA:   3'- -ACgUCCGCGGUUCuCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 70474 0.72 0.465342
Target:  5'- cGCGGGCGCCcGGuGGAUg--GCGUGCu -3'
miRNA:   3'- aCGUCCGCGGuUC-UCUGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 95771 0.72 0.473806
Target:  5'- cGCGGGCcgcucugGCgCGGGGGGCggCGCGgGCg -3'
miRNA:   3'- aCGUCCG-------CG-GUUCUCUGaaGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.