miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 52269 0.75 0.152934
Target:  5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 127025 0.75 0.168778
Target:  5'- cGCCCCUGggGCcCCGCgccUGCGCUGGCg- -3'
miRNA:   3'- -CGGGGGCa-UGuGGCG---ACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 30101 0.75 0.156764
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 132914 0.75 0.156764
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 102810 0.74 0.195298
Target:  5'- gGCCCCCuccGCGCCGCgccGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGca-UGUGGCGa--CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 126667 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 64450 0.74 0.186076
Target:  5'- cGCCCCCGc-CGCCGCccGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa-CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 83624 0.74 0.186076
Target:  5'- cGCCCCCGccugccgGCGCCGCaccgGCGCgGcGCUGc -3'
miRNA:   3'- -CGGGGGCa------UGUGGCGa---CGCGgC-CGAU- -5'
6358 3' -63 NC_001847.1 + 83576 0.74 0.195298
Target:  5'- -gCCCCG-GCGCCGCggaaGCGCUGGCg- -3'
miRNA:   3'- cgGGGGCaUGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 23854 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 90717 0.74 0.186076
Target:  5'- cGCCCCCGUGCgcgaacgcaGCCGCUcgcgGCGCgUGGCc- -3'
miRNA:   3'- -CGGGGGCAUG---------UGGCGA----CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 376 0.73 0.214945
Target:  5'- -gCCCCGcGCGCCGC-GCGCCGGa-- -3'
miRNA:   3'- cgGGGGCaUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 122694 0.73 0.220114
Target:  5'- aGgCUCCGccGCGCgCGCUGUGCCGGCg- -3'
miRNA:   3'- -CgGGGGCa-UGUG-GCGACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 135088 0.73 0.209879
Target:  5'- cGCCCCCGccCGCCGCaaugcacGCGCCGcGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa------CGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 89623 0.73 0.204917
Target:  5'- cGgCCCCGUccGCGCCGCccgGCGgCGGCg- -3'
miRNA:   3'- -CgGGGGCA--UGUGGCGa--CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 45160 0.73 0.214945
Target:  5'- aGCCCCgCGgcgcgcaGCACCGCUuccgccgcGCGCUGGCa- -3'
miRNA:   3'- -CGGGG-GCa------UGUGGCGA--------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 28433 0.73 0.209879
Target:  5'- cGCCCgCGcuggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 3713 0.73 0.209879
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 30253 0.73 0.20689
Target:  5'- gGCCCCgCGgggcgcucgccgcCACCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCau-----------GUGGCGACGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 28393 0.73 0.22539
Target:  5'- cGCCCCCcc-CGCCGCgGCGCCaGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGaCGCGGcCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.