Results 61 - 80 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 3' | -59.9 | NC_001847.1 | + | 120904 | 0.71 | 0.399929 |
Target: 5'- aGAGCGGGCuCGGCGUUUGCccucaccacGCCcccGGCc -3' miRNA: 3'- aCUCGUCUG-GCCGCAGACG---------CGGc--UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 116768 | 0.71 | 0.399929 |
Target: 5'- gGGGCcuGCUGG-GUCUGCGCCGAc- -3' miRNA: 3'- aCUCGucUGGCCgCAGACGCGGCUcg -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 94829 | 0.71 | 0.399929 |
Target: 5'- gGAGCuaucgguGGCguCGGaGUCUGCGCCGAGg -3' miRNA: 3'- aCUCGu------CUG--GCCgCAGACGCGGCUCg -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 22810 | 0.71 | 0.408359 |
Target: 5'- aGAuGCGGGCCGGCGgcggccgCUcccCGCCGAGg -3' miRNA: 3'- aCU-CGUCUGGCCGCa------GAc--GCGGCUCg -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 69496 | 0.71 | 0.412615 |
Target: 5'- cGGGCGcgcacgcGGCCguuGGCGgcgcagccaagccCUGCGCCGAGCa -3' miRNA: 3'- aCUCGU-------CUGG---CCGCa------------GACGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 125766 | 0.71 | 0.416899 |
Target: 5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3' miRNA: 3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 125826 | 0.71 | 0.416899 |
Target: 5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3' miRNA: 3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 23013 | 0.71 | 0.416899 |
Target: 5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3' miRNA: 3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 53729 | 0.71 | 0.416899 |
Target: 5'- gGGGCGGAUCGGCG-C-GCGgCGuAGCg -3' miRNA: 3'- aCUCGUCUGGCCGCaGaCGCgGC-UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 17158 | 0.71 | 0.425547 |
Target: 5'- gUGGGCGG-UUGGCGUC-GCGUccuCGAGCg -3' miRNA: 3'- -ACUCGUCuGGCCGCAGaCGCG---GCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 33182 | 0.71 | 0.425547 |
Target: 5'- -cGGCuGGCCGGC-UCUGCGCCcgacuuGGCg -3' miRNA: 3'- acUCGuCUGGCCGcAGACGCGGc-----UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 104738 | 0.71 | 0.425547 |
Target: 5'- cGAGCuuGCCGGCGgccaGCGCC-AGCg -3' miRNA: 3'- aCUCGucUGGCCGCaga-CGCGGcUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 58310 | 0.71 | 0.425547 |
Target: 5'- -cGGCAGGCCGGCaug-GCGCCGcGUa -3' miRNA: 3'- acUCGUCUGGCCGcagaCGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 91794 | 0.71 | 0.433422 |
Target: 5'- --cGCGGACgcuucguCGGCGUC-GCGCCGcGCg -3' miRNA: 3'- acuCGUCUG-------GCCGCAGaCGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 54590 | 0.71 | 0.434302 |
Target: 5'- cUGGGCGGcGCUGGCGgcgcgCgcccGCGCCGAuGCc -3' miRNA: 3'- -ACUCGUC-UGGCCGCa----Ga---CGCGGCU-CG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 70024 | 0.71 | 0.434302 |
Target: 5'- gUGaAGCGGAuuaaCCGGCG-CU-CGCUGAGCg -3' miRNA: 3'- -AC-UCGUCU----GGCCGCaGAcGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 118674 | 0.71 | 0.434302 |
Target: 5'- aGAGguGuCCGcGC-UCUGCGCCGcgGGCc -3' miRNA: 3'- aCUCguCuGGC-CGcAGACGCGGC--UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 19630 | 0.71 | 0.434302 |
Target: 5'- gGGGC--GCCGGCGUCgGCGCgCG-GCc -3' miRNA: 3'- aCUCGucUGGCCGCAGaCGCG-GCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 96343 | 0.71 | 0.434302 |
Target: 5'- -cGGCGGGCUGGCGUgCgacGCGCUGccGGCa -3' miRNA: 3'- acUCGUCUGGCCGCA-Ga--CGCGGC--UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 83586 | 0.71 | 0.434302 |
Target: 5'- --cGCGGaagcGCUGGCGagCUGCGCCGAcGCc -3' miRNA: 3'- acuCGUC----UGGCCGCa-GACGCGGCU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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