miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 22161 0.68 0.527896
Target:  5'- aAAGCCgGCGCaGCGgGCcgGCCUGCUc -3'
miRNA:   3'- aUUUGGaCGCGcCGCaCG--CGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 57987 0.68 0.537931
Target:  5'- aGGACCgGCGCGGUGgcgGCGCaggcgGCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CGCGga---CGaa -5'
6361 5' -59.2 NC_001847.1 + 1635 0.68 0.537931
Target:  5'- --cACCgcgGCGCGcagguacaCGUGCGCCUGCc- -3'
miRNA:   3'- auuUGGa--CGCGCc-------GCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 101451 0.68 0.537931
Target:  5'- --cGCCgccGCGCcGCGaGCGCCUGCg- -3'
miRNA:   3'- auuUGGa--CGCGcCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 104448 0.68 0.537931
Target:  5'- --cACCgcgGCGCGcagguacaCGUGCGCCUGCc- -3'
miRNA:   3'- auuUGGa--CGCGCc-------GCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 101630 0.68 0.54803
Target:  5'- --cGCCUcCGCGGCG-GCGCCcGCc- -3'
miRNA:   3'- auuUGGAcGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 82654 0.68 0.54803
Target:  5'- cGAACCcgcgaGCGCGGCGcgccGCGCUcgUGCUg -3'
miRNA:   3'- aUUUGGa----CGCGCCGCa---CGCGG--ACGAa -5'
6361 5' -59.2 NC_001847.1 + 28069 0.68 0.54803
Target:  5'- aAAACCUGCcCGGUcuggugcuGUgGCGCCUGCc- -3'
miRNA:   3'- aUUUGGACGcGCCG--------CA-CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 28814 0.68 0.54803
Target:  5'- --cGCCguucacgcagGCGCGGUgGUGCGgCUGCUa -3'
miRNA:   3'- auuUGGa---------CGCGCCG-CACGCgGACGAa -5'
6361 5' -59.2 NC_001847.1 + 38549 0.68 0.558189
Target:  5'- aAAACCcGCGUuacuGGCa-GCGCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG----CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 102993 0.68 0.558189
Target:  5'- --cGCC-GuCGCGGCGUGCGCggGCg- -3'
miRNA:   3'- auuUGGaC-GCGCCGCACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 20990 0.68 0.562268
Target:  5'- cUAGGCCUcccaaucggcaccgcGCGCGGCuGUGCGggcgacCCUGCg- -3'
miRNA:   3'- -AUUUGGA---------------CGCGCCG-CACGC------GGACGaa -5'
6361 5' -59.2 NC_001847.1 + 16039 0.68 0.5684
Target:  5'- --uGCCUGCcccgccgccccGCGGCGgccgcgGCGCCUcuGCUg -3'
miRNA:   3'- auuUGGACG-----------CGCCGCa-----CGCGGA--CGAa -5'
6361 5' -59.2 NC_001847.1 + 133368 0.68 0.5684
Target:  5'- gGGACCUGCGUGGCGggccucaucgaUGC-CCUGg-- -3'
miRNA:   3'- aUUUGGACGCGCCGC-----------ACGcGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 86435 0.68 0.5684
Target:  5'- -cGGCgCUGCGCGGCGcggGCaGCgUGCa- -3'
miRNA:   3'- auUUG-GACGCGCCGCa--CG-CGgACGaa -5'
6361 5' -59.2 NC_001847.1 + 41994 0.68 0.5684
Target:  5'- cGAGCgCUGCGuCGGCGcggaacgaagcUGCGCCgUGCc- -3'
miRNA:   3'- aUUUG-GACGC-GCCGC-----------ACGCGG-ACGaa -5'
6361 5' -59.2 NC_001847.1 + 104738 0.68 0.5684
Target:  5'- cGAGCUUGC-CGGCGgccaGCGCCaGCg- -3'
miRNA:   3'- aUUUGGACGcGCCGCa---CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 131669 0.68 0.5684
Target:  5'- cGAGCUcucgGCGCgccGGCGcGCGCUUGCUg -3'
miRNA:   3'- aUUUGGa---CGCG---CCGCaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 56184 0.68 0.578657
Target:  5'- cGAGgCUGCGCGaGCGccaGCCUGCg- -3'
miRNA:   3'- aUUUgGACGCGC-CGCacgCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 59400 0.68 0.578657
Target:  5'- gGAGCCggcggagGCGCGGCGgucaucgcUGCGCCccggGCc- -3'
miRNA:   3'- aUUUGGa------CGCGCCGC--------ACGCGGa---CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.