miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 95754 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 95700 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 68447 0.7 0.920102
Target:  5'- aUGGCGcgGGAGCGcCCGCUguggAgGCGa -3'
miRNA:   3'- gAUUGUa-CCUCGC-GGCGAaaa-UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 10166 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88599 0.7 0.920102
Target:  5'- -cGACGUGGgcgGGCGCgCGCUccacuuugUGCGCGc -3'
miRNA:   3'- gaUUGUACC---UCGCG-GCGAaa------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90766 0.7 0.920102
Target:  5'- -gAGCG-GGAGCGCC-CUUgagGCGCa -3'
miRNA:   3'- gaUUGUaCCUCGCGGcGAAaa-UGCGc -5'
6362 5' -50.3 NC_001847.1 + 114944 0.7 0.920102
Target:  5'- uUGGCGgggcGGGGCGCCGCcc---CGCGg -3'
miRNA:   3'- gAUUGUa---CCUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3259 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106072 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 112979 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120679 0.7 0.925874
Target:  5'- -cGGCGuUGGAGCGCaCGCcgagcaGCGCGg -3'
miRNA:   3'- gaUUGU-ACCUCGCG-GCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 84695 0.7 0.925874
Target:  5'- gCUcACGUGGccguagaaGGCGCUGCcUUUGCGCc -3'
miRNA:   3'- -GAuUGUACC--------UCGCGGCGaAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 43548 0.7 0.925874
Target:  5'- -cAACAc--GGCGCCGCggUUUGCGCGc -3'
miRNA:   3'- gaUUGUaccUCGCGGCGa-AAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 101902 0.7 0.925874
Target:  5'- -cGGCAgcGGAgGCGCCGCggcgcccgGCGCGg -3'
miRNA:   3'- gaUUGUa-CCU-CGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 38595 0.7 0.931383
Target:  5'- cCUGGCGUuGAGCGCgCGCgucgccugACGCGc -3'
miRNA:   3'- -GAUUGUAcCUCGCG-GCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12082 0.7 0.931383
Target:  5'- ------cGGAGCGCCGCggguccgGCGCc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 83020 0.7 0.931383
Target:  5'- --cGC-UGGGGCGCCGCcggccCGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70705 0.7 0.931383
Target:  5'- -cGGCGgcgGGGGCGcCCGCggcgaGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGC-GGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60828 0.7 0.936628
Target:  5'- aUGGCGcgaGGGGCGcCCGCggcgcUGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGC-GGCGaaa--AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39589 0.7 0.936628
Target:  5'- ----gGUGGccccAGCGCUGCUgcgGCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGAaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.