miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 11317 0.71 0.645468
Target:  5'- cCCGCCGAGgccGGCGg--GCGgcUGGCGCc -3'
miRNA:   3'- -GGUGGCUC---CCGCacaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 68827 0.71 0.651586
Target:  5'- cCCGCCGcAGGGCGccgcgaagaGCUcgGGCGCg -3'
miRNA:   3'- -GGUGGC-UCCCGCacaug----UGAa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83266 0.71 0.655662
Target:  5'- gCGgCGGGGGCGg--GCGCagaGGCGCa -3'
miRNA:   3'- gGUgGCUCCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77685 0.71 0.662788
Target:  5'- -gGCCGAGcgcuucaaggcGGCGUgcgcgcgcgcgcugGUgcGCGCUUGGCGCg -3'
miRNA:   3'- ggUGGCUC-----------CCGCA--------------CA--UGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32133 0.71 0.665838
Target:  5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3'
miRNA:   3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 82329 0.71 0.665838
Target:  5'- aCGcCCGAGGuccaGUGUGCGCggcgccagGGCGCa -3'
miRNA:   3'- gGU-GGCUCCcg--CACAUGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134946 0.71 0.665838
Target:  5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3'
miRNA:   3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 86196 0.71 0.675987
Target:  5'- gCACCGGGGGCG-GUccagucGCGCgccuGCGCc -3'
miRNA:   3'- gGUGGCUCCCGCaCA------UGUGaac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 53411 0.71 0.675987
Target:  5'- gCACCauggggcugGAGGGCGcGUGcCGCUUccaccGGCGCg -3'
miRNA:   3'- gGUGG---------CUCCCGCaCAU-GUGAA-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102689 0.71 0.675987
Target:  5'- gCGCUGGcGGGCGUGUGCuGCggcaGCGCc -3'
miRNA:   3'- gGUGGCU-CCCGCACAUG-UGaac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 107108 0.71 0.6861
Target:  5'- gCGCCGcgucuGGCGUGUGCA---GGCGCu -3'
miRNA:   3'- gGUGGCuc---CCGCACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122914 0.71 0.6861
Target:  5'- cUCGCCGuucGGGUGUGcGCGCgccGCGCa -3'
miRNA:   3'- -GGUGGCu--CCCGCACaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27313 0.7 0.700182
Target:  5'- -uGCCGGcGGGCGUGUcCACggcaaucugccggGGCGUg -3'
miRNA:   3'- ggUGGCU-CCCGCACAuGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 80187 0.7 0.702185
Target:  5'- gCCGCCGccucugcGGGCGgGUGCGCcgcgaagcgcagGGCGCu -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAUGUGaa----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122560 0.7 0.705185
Target:  5'- gCCGCacgagugCGAGGGCGccgcGUACGC--GGCGCc -3'
miRNA:   3'- -GGUG-------GCUCCCGCa---CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53713 0.7 0.716137
Target:  5'- gCCGCCGgcggcucgcGGGGCGgaucgGCGCgcGGCGUa -3'
miRNA:   3'- -GGUGGC---------UCCCGCaca--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102746 0.7 0.716137
Target:  5'- aCgGCCGAcgGGGCGUcGUGCcGCgUGcGCGCg -3'
miRNA:   3'- -GgUGGCU--CCCGCA-CAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 29390 0.7 0.716137
Target:  5'- gCCGCCGcgcuGGaGGCGgccGCGCUggcGGCGCg -3'
miRNA:   3'- -GGUGGC----UC-CCGCacaUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 26090 0.7 0.716137
Target:  5'- -uGCUGGGGGCGgaggGaGCAg-UGGCGCu -3'
miRNA:   3'- ggUGGCUCCCGCa---CaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48163 0.7 0.716137
Target:  5'- aCCACgUGAuuuagcagcauGGGCGUGaACACgggcucggGGCGCg -3'
miRNA:   3'- -GGUG-GCU-----------CCCGCACaUGUGaa------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.