miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 51780 0.7 0.754273
Target:  5'- cGGCGCCAGcUCGCcccGCGCGucccGGUCGc -3'
miRNA:   3'- cCCGUGGUUcAGUGu--CGCGUu---CCAGC- -5'
6363 5' -55 NC_001847.1 + 83174 0.7 0.754273
Target:  5'- cGGcGCACCcAGugcaUCACuGcCGCGGGGUCGc -3'
miRNA:   3'- -CC-CGUGGuUC----AGUGuC-GCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 1211 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 58818 0.7 0.763943
Target:  5'- cGGCGCCuGGgC-CGGUGCGAgGGUCGg -3'
miRNA:   3'- cCCGUGGuUCaGuGUCGCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 124164 0.7 0.763943
Target:  5'- aGGCGCCAAGagACuucGCGCGccGUCGc -3'
miRNA:   3'- cCCGUGGUUCagUGu--CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 32130 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 45444 0.7 0.763943
Target:  5'- aGGGCGCCc-GUCGCGGCGCGc----- -3'
miRNA:   3'- -CCCGUGGuuCAGUGUCGCGUuccagc -5'
6363 5' -55 NC_001847.1 + 46482 0.7 0.763943
Target:  5'- aGGGCcuuCCAcGUCGCAGCGUggccGAGcGUUGc -3'
miRNA:   3'- -CCCGu--GGUuCAGUGUCGCG----UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68835 0.7 0.763943
Target:  5'- aGGGCGCCGcgaagAGcUCG-GGCGCGAGG-CGg -3'
miRNA:   3'- -CCCGUGGU-----UC-AGUgUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 84696 0.7 0.763943
Target:  5'- cGGCuuGCCGuccuuGUCGCAGCGC-GGGUUc -3'
miRNA:   3'- cCCG--UGGUu----CAGUGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 134943 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32373 0.69 0.770641
Target:  5'- gGGGCGCCGGcGUCGCGgGCGUcgcgccuugcguggGGGGUUu -3'
miRNA:   3'- -CCCGUGGUU-CAGUGU-CGCG--------------UUCCAGc -5'
6363 5' -55 NC_001847.1 + 118881 0.69 0.773492
Target:  5'- cGGGCGCUcGGUgCACGGgGcCGGGGcCGg -3'
miRNA:   3'- -CCCGUGGuUCA-GUGUCgC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 114743 0.69 0.773492
Target:  5'- cGGUGCCGgcGGUCGCGGuCGC--GGUCGc -3'
miRNA:   3'- cCCGUGGU--UCAGUGUC-GCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 134577 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 31764 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 91769 0.69 0.773492
Target:  5'- cGGGCGCUccGUCgGCGGCGCu-GGcCGc -3'
miRNA:   3'- -CCCGUGGuuCAG-UGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 122124 0.69 0.782912
Target:  5'- -cGCugCAGGUCGCGacggccggcGCGCAGGG-CGc -3'
miRNA:   3'- ccCGugGUUCAGUGU---------CGCGUUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.