miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 122124 0.69 0.782912
Target:  5'- -cGCugCAGGUCGCGacggccggcGCGCAGGG-CGc -3'
miRNA:   3'- ccCGugGUUCAGUGU---------CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 69689 0.69 0.792193
Target:  5'- uGGGCGCgGGG-C-CGGCGCucGGUCc -3'
miRNA:   3'- -CCCGUGgUUCaGuGUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 46533 0.69 0.792193
Target:  5'- gGGGCGgCGgcGG-CGC-GCGCGAGGUCc -3'
miRNA:   3'- -CCCGUgGU--UCaGUGuCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 40170 0.69 0.792193
Target:  5'- uGGGCGuCCuGGUCGCGGCucuGCGAGuaGUUGg -3'
miRNA:   3'- -CCCGU-GGuUCAGUGUCG---CGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 135012 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32199 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 102582 0.69 0.801326
Target:  5'- uGGCguccGCCAGGUCGCccAGCGcCGAGGgcugCGc -3'
miRNA:   3'- cCCG----UGGUUCAGUG--UCGC-GUUCCa---GC- -5'
6363 5' -55 NC_001847.1 + 53837 0.69 0.801326
Target:  5'- gGGGCGCUgaaGAG-C-CGGCGCgGGGGUCa -3'
miRNA:   3'- -CCCGUGG---UUCaGuGUCGCG-UUCCAGc -5'
6363 5' -55 NC_001847.1 + 118831 0.69 0.801326
Target:  5'- aGGGCgcggaGCCGAGggCGCgAGCGCGaguaagaccGGGUUGg -3'
miRNA:   3'- -CCCG-----UGGUUCa-GUG-UCGCGU---------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 131524 0.69 0.810301
Target:  5'- -uGCGCCAGGa-GCGGCGCAuguuuGGUCu -3'
miRNA:   3'- ccCGUGGUUCagUGUCGCGUu----CCAGc -5'
6363 5' -55 NC_001847.1 + 23429 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 126242 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 60255 0.69 0.810301
Target:  5'- cGGCGCCGAcuUCGCAgGCGCuugcguGGUCa -3'
miRNA:   3'- cCCGUGGUUc-AGUGU-CGCGuu----CCAGc -5'
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 106822 0.68 0.81911
Target:  5'- gGGGCGCCGGGcC-CGGCGCccgccucucgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 133616 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 30803 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 571 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 104191 0.68 0.81911
Target:  5'- gGGGCACCGcGcgCGCAGCGCcguuuaugcgAAGGcCu -3'
miRNA:   3'- -CCCGUGGUuCa-GUGUCGCG----------UUCCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.