Results 61 - 80 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 124585 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3' miRNA: 3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 48207 | 0.66 | 0.902882 |
Target: 5'- cGGCcaggGCCGAGgagCGCAGCGCcgccaccauGGcGUCGa -3' miRNA: 3'- cCCG----UGGUUCa--GUGUCGCGu--------UC-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 14443 | 0.66 | 0.902882 |
Target: 5'- uGGCGCCGAGcgCGCGGcCGCGcuGcUCGg -3' miRNA: 3'- cCCGUGGUUCa-GUGUC-GCGUucC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 2156 | 0.66 | 0.902882 |
Target: 5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3' miRNA: 3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 21741 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3' miRNA: 3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12379 | 0.66 | 0.902882 |
Target: 5'- cGGCugCGgccUCGgGGCGCGuguGGUCGg -3' miRNA: 3'- cCCGugGUuc-AGUgUCGCGUu--CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 21772 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3' miRNA: 3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61875 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCcgcgGGGguugCACGGCgagcggaaguacGCGAGGUCc -3' miRNA: 3'- cCCGUGG----UUCa---GUGUCG------------CGUUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 99183 | 0.66 | 0.902882 |
Target: 5'- uGGCGCCcucguGGUCcucGCGCGAGG-CGg -3' miRNA: 3'- cCCGUGGu----UCAGuguCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 100873 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCcAGcCGCcGCGCGccGGUCu -3' miRNA: 3'- cCCGUGGuUCaGUGuCGCGUu-CCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 68215 | 0.66 | 0.902882 |
Target: 5'- gGGGCGCaCGGGcCGCGGCG--GGGcCGc -3' miRNA: 3'- -CCCGUG-GUUCaGUGUCGCguUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 116702 | 0.66 | 0.902242 |
Target: 5'- cGGCACCGcacggcuGGcCGCGGCGCAcguGGcCa -3' miRNA: 3'- cCCGUGGU-------UCaGUGUCGCGUu--CCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 90161 | 0.67 | 0.896375 |
Target: 5'- cGGGCgcaugGCCAAG-CGCAGCcuuGCGGGGcugcugCGg -3' miRNA: 3'- -CCCG-----UGGUUCaGUGUCG---CGUUCCa-----GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 48194 | 0.67 | 0.896375 |
Target: 5'- cGGGC-UCGGGgcgCGCGGCGCugcuGUCGa -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGCGuuc-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 106077 | 0.67 | 0.895712 |
Target: 5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3' miRNA: 3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 66467 | 0.67 | 0.895712 |
Target: 5'- cGGGCACgGuagucucAGUCGCc-CGCAGGGgCGg -3' miRNA: 3'- -CCCGUGgU-------UCAGUGucGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 3264 | 0.67 | 0.895712 |
Target: 5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3' miRNA: 3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 124715 | 0.67 | 0.894377 |
Target: 5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3' miRNA: 3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 130186 | 0.67 | 0.889632 |
Target: 5'- cGGGCGCCcGGcCugaagagacggGCGGCGCgGAGGgcgCGg -3' miRNA: 3'- -CCCGUGGuUCaG-----------UGUCGCG-UUCCa--GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95306 | 0.67 | 0.889632 |
Target: 5'- uGGCGCCuccAGgCGCGGCGCcggcAGGGcCGa -3' miRNA: 3'- cCCGUGGu--UCaGUGUCGCG----UUCCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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