miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 92441 0.66 0.915173
Target:  5'- -aGCAUCAAucGUgcgacaCACGGCGCAGGGcCGg -3'
miRNA:   3'- ccCGUGGUU--CA------GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 49960 0.66 0.915173
Target:  5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3'
miRNA:   3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 95656 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 95710 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 95764 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 31930 0.66 0.915173
Target:  5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3'
miRNA:   3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 47532 0.66 0.914581
Target:  5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3'
miRNA:   3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5'
6363 5' -55 NC_001847.1 + 46096 0.66 0.909148
Target:  5'- cGGcGCGCCAugccGUCGCccAGCGCGcacacGGcGUCGu -3'
miRNA:   3'- -CC-CGUGGUu---CAGUG--UCGCGU-----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 99785 0.66 0.909148
Target:  5'- uGGGCGggGGGcagCGCcuguGGUGCGGGGUCGg -3'
miRNA:   3'- -CCCGUggUUCa--GUG----UCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 12067 0.66 0.909148
Target:  5'- cGGaCGCCGAGgccgCGgAGCGCcgcGGGUCc -3'
miRNA:   3'- cCC-GUGGUUCa---GUgUCGCGu--UCCAGc -5'
6363 5' -55 NC_001847.1 + 94234 0.66 0.909148
Target:  5'- gGGGCGCCcg--CGCGGCGCcguGGagCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCGuu-CCa-GC- -5'
6363 5' -55 NC_001847.1 + 54319 0.66 0.909148
Target:  5'- -uGCccccCCAAGUCGCGGCGCGcGGccuUCGc -3'
miRNA:   3'- ccCGu---GGUUCAGUGUCGCGUuCC---AGC- -5'
6363 5' -55 NC_001847.1 + 116415 0.66 0.909148
Target:  5'- uGGGCcCCGGGcCGC-GCGCuuGGGcUCGa -3'
miRNA:   3'- -CCCGuGGUUCaGUGuCGCGu-UCC-AGC- -5'
6363 5' -55 NC_001847.1 + 26508 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 129321 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 63146 0.66 0.909148
Target:  5'- uGGCACCGGaUCcCGGCGCGcAGG-CGc -3'
miRNA:   3'- cCCGUGGUUcAGuGUCGCGU-UCCaGC- -5'
6363 5' -55 NC_001847.1 + 35606 0.66 0.909148
Target:  5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3'
miRNA:   3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 48207 0.66 0.902882
Target:  5'- cGGCcaggGCCGAGgagCGCAGCGCcgccaccauGGcGUCGa -3'
miRNA:   3'- cCCG----UGGUUCa--GUGUCGCGu--------UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68215 0.66 0.902882
Target:  5'- gGGGCGCaCGGGcCGCGGCG--GGGcCGc -3'
miRNA:   3'- -CCCGUG-GUUCaGUGUCGCguUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.