miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 21772 0.66 0.902882
Target:  5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3'
miRNA:   3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 22614 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 23429 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 23708 0.7 0.714582
Target:  5'- gGGGCGC--GGUC--GGCGCAgAGGUCGa -3'
miRNA:   3'- -CCCGUGguUCAGugUCGCGU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 23787 0.74 0.529833
Target:  5'- cGGGCGCgAGGUCGCccAGCGCGGcGGcCa -3'
miRNA:   3'- -CCCGUGgUUCAGUG--UCGCGUU-CCaGc -5'
6363 5' -55 NC_001847.1 + 24929 0.68 0.844458
Target:  5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3'
miRNA:   3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 26508 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 27409 0.65 0.930738
Target:  5'- gGGGCGCUGuugccgccggcgcGGUCggugucguucgcaGCGGCGCGGGGg-- -3'
miRNA:   3'- -CCCGUGGU-------------UCAG-------------UGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 27815 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 27872 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 28139 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 28324 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 29578 0.66 0.915173
Target:  5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 30803 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 30977 0.68 0.822585
Target:  5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3'
miRNA:   3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 31764 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 31821 0.66 0.920953
Target:  5'- cGGCGCgGGGgCAgAGUGCGAGGa-- -3'
miRNA:   3'- cCCGUGgUUCaGUgUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 31930 0.66 0.915173
Target:  5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3'
miRNA:   3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.