miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 12067 0.66 0.909148
Target:  5'- cGGaCGCCGAGgccgCGgAGCGCcgcGGGUCc -3'
miRNA:   3'- cCC-GUGGUUCa---GUgUCGCGu--UCCAGc -5'
6363 5' -55 NC_001847.1 + 12379 0.66 0.902882
Target:  5'- cGGCugCGgccUCGgGGCGCGuguGGUCGg -3'
miRNA:   3'- cCCGugGUuc-AGUgUCGCGUu--CCAGC- -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 12571 0.67 0.882656
Target:  5'- cGGGCGCCGcGUaCGCGGCGCcc--UCGc -3'
miRNA:   3'- -CCCGUGGUuCA-GUGUCGCGuuccAGC- -5'
6363 5' -55 NC_001847.1 + 14167 0.66 0.915173
Target:  5'- aGGGCgacgGCCGcGcuuaCGCGGCGCuGGGUCc -3'
miRNA:   3'- -CCCG----UGGUuCa---GUGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 14353 0.66 0.920953
Target:  5'- cGGCGCCugcgGGgaacgcCGcCAGCGCGcGGUCGu -3'
miRNA:   3'- cCCGUGGu---UCa-----GU-GUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 14443 0.66 0.902882
Target:  5'- uGGCGCCGAGcgCGCGGcCGCGcuGcUCGg -3'
miRNA:   3'- cCCGUGGUUCa-GUGUC-GCGUucC-AGC- -5'
6363 5' -55 NC_001847.1 + 14446 0.73 0.590907
Target:  5'- cGGCGCCGGGgugCGCGGCcGCGgccucuGGGUCu -3'
miRNA:   3'- cCCGUGGUUCa--GUGUCG-CGU------UCCAGc -5'
6363 5' -55 NC_001847.1 + 14990 0.72 0.62195
Target:  5'- aGGCACCGcaUCGCgAGCGCGccggaggacaAGGUCGc -3'
miRNA:   3'- cCCGUGGUucAGUG-UCGCGU----------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 16577 0.67 0.882656
Target:  5'- cGGGacaGCgGGGUCgggGCGGCGUggGGUg- -3'
miRNA:   3'- -CCCg--UGgUUCAG---UGUCGCGuuCCAgc -5'
6363 5' -55 NC_001847.1 + 16835 0.68 0.836196
Target:  5'- cGGGUAgCC-AGUgGCGGUGCAGGuguaGUCGa -3'
miRNA:   3'- -CCCGU-GGuUCAgUGUCGCGUUC----CAGC- -5'
6363 5' -55 NC_001847.1 + 16841 0.7 0.744492
Target:  5'- cGGGCAUCGGG--GCGGCGCucGAGG-CGa -3'
miRNA:   3'- -CCCGUGGUUCagUGUCGCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 16973 0.66 0.920953
Target:  5'- -cGCACC--GUC-CAGCGCAGGGa-- -3'
miRNA:   3'- ccCGUGGuuCAGuGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 17123 0.7 0.714582
Target:  5'- uGGaACCAGgagacGUCGCAGCGCA-GGUUGg -3'
miRNA:   3'- cCCgUGGUU-----CAGUGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 17819 0.77 0.379075
Target:  5'- aGGGCGCCAugccAGU-GCGGCGCAcgucggcgaaacagAGGUCGu -3'
miRNA:   3'- -CCCGUGGU----UCAgUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 19630 0.67 0.868024
Target:  5'- gGGGCGCCGGcGUC--GGCGCGcGGcCGc -3'
miRNA:   3'- -CCCGUGGUU-CAGugUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 19895 0.68 0.836196
Target:  5'- cGGGCGCgAGGUagaAGCGCAcgagGGcGUCGc -3'
miRNA:   3'- -CCCGUGgUUCAgugUCGCGU----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 21327 0.66 0.920953
Target:  5'- gGGGUGCCAAGgccauuguggCGCAgacgauGCGCGccGUCGg -3'
miRNA:   3'- -CCCGUGGUUCa---------GUGU------CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 21741 0.66 0.902882
Target:  5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3'
miRNA:   3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.