miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 48845 0.83 0.168244
Target:  5'- gGGGCGCCucGgccgCGCGGCGCGAGGUaCGg -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGCGUUCCA-GC- -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 134943 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 135012 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 114743 0.69 0.773492
Target:  5'- cGGUGCCGgcGGUCGCGGuCGC--GGUCGc -3'
miRNA:   3'- cCCGUGGU--UCAGUGUC-GCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 23708 0.7 0.714582
Target:  5'- gGGGCGC--GGUC--GGCGCAgAGGUCGa -3'
miRNA:   3'- -CCCGUGguUCAGugUCGCGU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 60255 0.69 0.810301
Target:  5'- cGGCGCCGAcuUCGCAgGCGCuugcguGGUCa -3'
miRNA:   3'- cCCGUGGUUc-AGUGU-CGCGuu----CCAGc -5'
6363 5' -55 NC_001847.1 + 58818 0.7 0.763943
Target:  5'- cGGCGCCuGGgC-CGGUGCGAgGGUCGg -3'
miRNA:   3'- cCCGUGGuUCaGuGUCGCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 90 0.72 0.611584
Target:  5'- uGGGCGCgGAG-CGCgAGgGUAGGGUUGg -3'
miRNA:   3'- -CCCGUGgUUCaGUG-UCgCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 6690 0.71 0.694265
Target:  5'- cGGCcgGCCGGG-CGCGcGCGCAGGGcCGa -3'
miRNA:   3'- cCCG--UGGUUCaGUGU-CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 85249 0.7 0.714582
Target:  5'- cGGCGCCAGGU----GCGCGAGGUa- -3'
miRNA:   3'- cCCGUGGUUCAguguCGCGUUCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.