miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 48845 0.83 0.168244
Target:  5'- gGGGCGCCucGgccgCGCGGCGCGAGGUaCGg -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGCGUUCCA-GC- -5'
6363 5' -55 NC_001847.1 + 3427 0.82 0.181663
Target:  5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5'
6363 5' -55 NC_001847.1 + 65495 0.75 0.48077
Target:  5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3'
miRNA:   3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5'
6363 5' -55 NC_001847.1 + 106770 0.74 0.490414
Target:  5'- gGGGCGCCGucUC-CGGCGCGAGGgCGc -3'
miRNA:   3'- -CCCGUGGUucAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134901 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 34286 0.72 0.62195
Target:  5'- uGGGCGCCGcGcUCGCGGCcgucaGCGAGGcuUCGg -3'
miRNA:   3'- -CCCGUGGUuC-AGUGUCG-----CGUUCC--AGC- -5'
6363 5' -55 NC_001847.1 + 100648 0.71 0.684021
Target:  5'- cGGCGCCAGGgccgCgcugcuGCGGCGgGGGGUCc -3'
miRNA:   3'- cCCGUGGUUCa---G------UGUCGCgUUCCAGc -5'
6363 5' -55 NC_001847.1 + 96847 0.65 0.931777
Target:  5'- aGGGCGCguCGGGg-GCGGCGguGGG-CGg -3'
miRNA:   3'- -CCCGUG--GUUCagUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 111262 0.79 0.290083
Target:  5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 90 0.72 0.611584
Target:  5'- uGGGCGCgGAG-CGCgAGgGUAGGGUUGg -3'
miRNA:   3'- -CCCGUGgUUCaGUG-UCgCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100523 0.71 0.673734
Target:  5'- uGGGCugCGGGUCGCGGagugGguGGG-CGg -3'
miRNA:   3'- -CCCGugGUUCAGUGUCg---CguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 89887 0.75 0.434026
Target:  5'- gGGGCGCCuucGGggaCGCGGCGCccGAGGUUGu -3'
miRNA:   3'- -CCCGUGGu--UCa--GUGUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 23787 0.74 0.529833
Target:  5'- cGGGCGCgAGGUCGCccAGCGCGGcGGcCa -3'
miRNA:   3'- -CCCGUGgUUCAGUG--UCGCGUU-CCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.