miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 109439 0.65 0.931777
Target:  5'- cGGGC-CgcAGUgGCGGCuuacgucgGCGAGGUCGu -3'
miRNA:   3'- -CCCGuGguUCAgUGUCG--------CGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 96847 0.65 0.931777
Target:  5'- aGGGCGCguCGGGg-GCGGCGguGGG-CGg -3'
miRNA:   3'- -CCCGUG--GUUCagUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 40004 0.65 0.931777
Target:  5'- cGGCACCcccAAG-CGCAGCGCc-GG-CGa -3'
miRNA:   3'- cCCGUGG---UUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 130222 0.65 0.930738
Target:  5'- gGGGCGCUGuugccgccggcgcGGUCggugucguucgcaGCGGCGCGGGGg-- -3'
miRNA:   3'- -CCCGUGGU-------------UCAG-------------UGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 27409 0.65 0.930738
Target:  5'- gGGGCGCUGuugccgccggcgcGGUCggugucguucgcaGCGGCGCGGGGg-- -3'
miRNA:   3'- -CCCGUGGU-------------UCAG-------------UGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 97431 0.65 0.931777
Target:  5'- cGGcGCGCCcAGcaGCAGCGCGcacgugacgAGGUCc -3'
miRNA:   3'- -CC-CGUGGuUCagUGUCGCGU---------UCCAGc -5'
6363 5' -55 NC_001847.1 + 99943 0.65 0.931777
Target:  5'- aGGGCGCCcAGcCGCGcGCGCuccuccucgAAGGcCGc -3'
miRNA:   3'- -CCCGUGGuUCaGUGU-CGCG---------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 37032 0.65 0.931777
Target:  5'- gGGGCGCCGGGcUCGCAcucuagccuGgGCuGGGggCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGUGU---------CgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 75383 0.65 0.931777
Target:  5'- uGGGaCACCGucucgcGUCGCcGcCGCGAGG-CGg -3'
miRNA:   3'- -CCC-GUGGUu-----CAGUGuC-GCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91238 0.65 0.931777
Target:  5'- cGGGguCCGccugcAGcucgcaCGCGGCGCAcaugGGGUCGc -3'
miRNA:   3'- -CCCguGGU-----UCa-----GUGUCGCGU----UCCAGC- -5'
6363 5' -55 NC_001847.1 + 47646 0.65 0.931777
Target:  5'- uGGCGCUGAGUgCGCAGCGaguacGUCa -3'
miRNA:   3'- cCCGUGGUUCA-GUGUCGCguuc-CAGc -5'
6363 5' -55 NC_001847.1 + 2221 0.66 0.920953
Target:  5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3'
miRNA:   3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 46317 0.66 0.920953
Target:  5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3'
miRNA:   3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 113918 0.66 0.920953
Target:  5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3'
miRNA:   3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 52844 0.66 0.920953
Target:  5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3'
miRNA:   3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 62620 0.66 0.923196
Target:  5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3'
miRNA:   3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5'
6363 5' -55 NC_001847.1 + 81569 0.66 0.926487
Target:  5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3'
miRNA:   3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5'
6363 5' -55 NC_001847.1 + 4666 0.66 0.926487
Target:  5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3'
miRNA:   3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 32982 0.66 0.926487
Target:  5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3'
miRNA:   3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 80238 0.66 0.926487
Target:  5'- cGGGCcacguuGCCGGGUCgACGGCgugccgcaGCAGGGcCu -3'
miRNA:   3'- -CCCG------UGGUUCAG-UGUCG--------CGUUCCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.