miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 90 0.72 0.611584
Target:  5'- uGGGCGCgGAG-CGCgAGgGUAGGGUUGg -3'
miRNA:   3'- -CCCGUGgUUCaGUG-UCgCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 571 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 1211 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 2156 0.66 0.902882
Target:  5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3'
miRNA:   3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 2221 0.66 0.920953
Target:  5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3'
miRNA:   3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 3264 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 3427 0.82 0.181663
Target:  5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 3978 0.71 0.673734
Target:  5'- aGGGCGCCGGGggccgggcgCGCGGCcccGCGGGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--------GUGUCG---CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 4608 0.67 0.882656
Target:  5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3'
miRNA:   3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5'
6363 5' -55 NC_001847.1 + 4666 0.66 0.926487
Target:  5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3'
miRNA:   3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 6690 0.71 0.694265
Target:  5'- cGGCcgGCCGGG-CGCGcGCGCAGGGcCGa -3'
miRNA:   3'- cCCG--UGGUUCaGUGU-CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 7719 0.66 0.926487
Target:  5'- uGGGCAuUCAGG-CGCAGgGCGcGGgcgCGg -3'
miRNA:   3'- -CCCGU-GGUUCaGUGUCgCGUuCCa--GC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 8449 0.79 0.290083
Target:  5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 10626 0.68 0.85252
Target:  5'- uGGGCGCCAuGUaccuaGCGGUGCcuGGGgacgCGg -3'
miRNA:   3'- -CCCGUGGUuCAg----UGUCGCGu-UCCa---GC- -5'
6363 5' -55 NC_001847.1 + 11184 0.67 0.875452
Target:  5'- gGGGCuGCCGcuGGUCcgcGCGGgGCu-GGUCGa -3'
miRNA:   3'- -CCCG-UGGU--UCAG---UGUCgCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 12021 0.66 0.915173
Target:  5'- gGGGCGCCGgcgaGGUCGUAGgcaucCGCAGGGg-- -3'
miRNA:   3'- -CCCGUGGU----UCAGUGUC-----GCGUUCCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.