miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 135012 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134943 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134901 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 134577 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 134044 0.67 0.868024
Target:  5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3'
miRNA:   3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 133790 0.68 0.822585
Target:  5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3'
miRNA:   3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 133616 0.68 0.81911
Target:  5'- cGGGCGCCu--UCGCGcGCGcCGAGGcCGc -3'
miRNA:   3'- -CCCGUGGuucAGUGU-CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 132391 0.66 0.915173
Target:  5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 131524 0.69 0.810301
Target:  5'- -uGCGCCAGGa-GCGGCGCAuguuuGGUCu -3'
miRNA:   3'- ccCGUGGUUCagUGUCGCGUu----CCAGc -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 130952 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 130685 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 130628 0.68 0.85252
Target:  5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3'
miRNA:   3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 130222 0.65 0.930738
Target:  5'- gGGGCGCUGuugccgccggcgcGGUCggugucguucgcaGCGGCGCGGGGg-- -3'
miRNA:   3'- -CCCGUGGU-------------UCAG-------------UGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 130186 0.67 0.889632
Target:  5'- cGGGCGCCcGGcCugaagagacggGCGGCGCgGAGGgcgCGg -3'
miRNA:   3'- -CCCGUGGuUCaG-----------UGUCGCG-UUCCa--GC- -5'
6363 5' -55 NC_001847.1 + 129339 0.67 0.875452
Target:  5'- cGGcGCGCCAAGcgcaagCGCGGUGCcGGGccCGg -3'
miRNA:   3'- -CC-CGUGGUUCa-----GUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 129321 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 126505 0.68 0.851723
Target:  5'- uGGGCGcCCGAGUcCGCAGCggccgcucccccgGCGGGGcUUGc -3'
miRNA:   3'- -CCCGU-GGUUCA-GUGUCG-------------CGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 126242 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 125427 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.