miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 125377 0.76 0.416078
Target:  5'- -aGCACCGGGggGC-GCGCGAGGUCGa -3'
miRNA:   3'- ccCGUGGUUCagUGuCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 125182 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 125080 0.67 0.875452
Target:  5'- gGGGCGCUggGcccgCGCGGC-CAAGauGUCGu -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGcGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 124715 0.67 0.894377
Target:  5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3'
miRNA:   3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 124585 0.66 0.902882
Target:  5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3'
miRNA:   3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 124554 0.66 0.902882
Target:  5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3'
miRNA:   3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 124164 0.7 0.763943
Target:  5'- aGGCGCCAAGagACuucGCGCGccGUCGc -3'
miRNA:   3'- cCCGUGGUUCagUGu--CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 123681 0.73 0.590907
Target:  5'- gGGGCucGCCAcgcgcacgguAGcCGCuGGCGCGGGGUCGc -3'
miRNA:   3'- -CCCG--UGGU----------UCaGUG-UCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 123061 0.68 0.860378
Target:  5'- cGGGCGCCGGaccCGCGGCGCuccgcGGccUCGg -3'
miRNA:   3'- -CCCGUGGUUca-GUGUCGCGuu---CC--AGC- -5'
6363 5' -55 NC_001847.1 + 122574 0.69 0.782912
Target:  5'- aGGGCGCCGcGUaCGCGGCGCcc-GUUGc -3'
miRNA:   3'- -CCCGUGGUuCA-GUGUCGCGuucCAGC- -5'
6363 5' -55 NC_001847.1 + 122124 0.69 0.782912
Target:  5'- -cGCugCAGGUCGCGacggccggcGCGCAGGG-CGc -3'
miRNA:   3'- ccCGugGUUCAGUGU---------CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 118881 0.69 0.773492
Target:  5'- cGGGCGCUcGGUgCACGGgGcCGGGGcCGg -3'
miRNA:   3'- -CCCGUGGuUCA-GUGUCgC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 118831 0.69 0.801326
Target:  5'- aGGGCgcggaGCCGAGggCGCgAGCGCGaguaagaccGGGUUGg -3'
miRNA:   3'- -CCCG-----UGGUUCa-GUG-UCGCGU---------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 117736 1.1 0.002529
Target:  5'- uGGGCACCAAGUCACAGCGCAAGGUCGu -3'
miRNA:   3'- -CCCGUGGUUCAGUGUCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 116702 0.66 0.902242
Target:  5'- cGGCACCGcacggcuGGcCGCGGCGCAcguGGcCa -3'
miRNA:   3'- cCCGUGGU-------UCaGUGUCGCGUu--CCaGc -5'
6363 5' -55 NC_001847.1 + 116415 0.66 0.909148
Target:  5'- uGGGCcCCGGGcCGC-GCGCuuGGGcUCGa -3'
miRNA:   3'- -CCCGuGGUUCaGUGuCGCGu-UCC-AGC- -5'
6363 5' -55 NC_001847.1 + 116135 0.72 0.642698
Target:  5'- cGGGCGCUggGgcgCGCGGCcCGAGG-CGc -3'
miRNA:   3'- -CCCGUGGuuCa--GUGUCGcGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 116114 0.68 0.860378
Target:  5'- cGGGCcuGCCGgcggGGUCAC-GCGCGaagAGGcCGa -3'
miRNA:   3'- -CCCG--UGGU----UCAGUGuCGCGU---UCCaGC- -5'
6363 5' -55 NC_001847.1 + 116065 0.67 0.875452
Target:  5'- cGGGCACCGGGgcgCACuuuCGCAcGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--GUGuc-GCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 114743 0.69 0.773492
Target:  5'- cGGUGCCGgcGGUCGCGGuCGC--GGUCGc -3'
miRNA:   3'- cCCGUGGU--UCAGUGUC-GCGuuCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.