Results 21 - 40 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 21772 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3' miRNA: 3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 21741 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3' miRNA: 3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12379 | 0.66 | 0.902882 |
Target: 5'- cGGCugCGgccUCGgGGCGCGuguGGUCGg -3' miRNA: 3'- cCCGugGUuc-AGUgUCGCGUu--CCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 2156 | 0.66 | 0.902882 |
Target: 5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3' miRNA: 3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61875 | 0.66 | 0.902882 |
Target: 5'- cGGCGCCcgcgGGGguugCACGGCgagcggaaguacGCGAGGUCc -3' miRNA: 3'- cCCGUGG----UUCa---GUGUCG------------CGUUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12021 | 0.66 | 0.915173 |
Target: 5'- gGGGCGCCGgcgaGGUCGUAGgcaucCGCAGGGg-- -3' miRNA: 3'- -CCCGUGGU----UCAGUGUC-----GCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 29578 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3' miRNA: 3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 32982 | 0.66 | 0.926487 |
Target: 5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3' miRNA: 3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 4666 | 0.66 | 0.926487 |
Target: 5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3' miRNA: 3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 81569 | 0.66 | 0.926487 |
Target: 5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3' miRNA: 3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 62620 | 0.66 | 0.923196 |
Target: 5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3' miRNA: 3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 52844 | 0.66 | 0.920953 |
Target: 5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3' miRNA: 3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 113918 | 0.66 | 0.920953 |
Target: 5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3' miRNA: 3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 46317 | 0.66 | 0.920953 |
Target: 5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3' miRNA: 3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 2221 | 0.66 | 0.920953 |
Target: 5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3' miRNA: 3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95764 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95710 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95656 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 49960 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3' miRNA: 3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 31930 | 0.66 | 0.915173 |
Target: 5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3' miRNA: 3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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