miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 51830 0.74 0.529833
Target:  5'- aGGCGCCAAG-CGCccccguGCGCG-GGUCGa -3'
miRNA:   3'- cCCGUGGUUCaGUGu-----CGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 84548 0.74 0.500147
Target:  5'- aGGCGCCcgcGUCGCAGCGCuccAGGUa- -3'
miRNA:   3'- cCCGUGGuu-CAGUGUCGCGu--UCCAgc -5'
6363 5' -55 NC_001847.1 + 23787 0.74 0.529833
Target:  5'- cGGGCGCgAGGUCGCccAGCGCGGcGGcCa -3'
miRNA:   3'- -CCCGUGgUUCAGUG--UCGCGUU-CCaGc -5'
6363 5' -55 NC_001847.1 + 123681 0.73 0.590907
Target:  5'- gGGGCucGCCAcgcgcacgguAGcCGCuGGCGCGGGGUCGc -3'
miRNA:   3'- -CCCG--UGGU----------UCaGUG-UCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 14446 0.73 0.590907
Target:  5'- cGGCGCCGGGgugCGCGGCcGCGgccucuGGGUCu -3'
miRNA:   3'- cCCGUGGUUCa--GUGUCG-CGU------UCCAGc -5'
6363 5' -55 NC_001847.1 + 90 0.72 0.611584
Target:  5'- uGGGCGCgGAG-CGCgAGgGUAGGGUUGg -3'
miRNA:   3'- -CCCGUGgUUCaGUG-UCgCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 61185 0.72 0.611584
Target:  5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3'
miRNA:   3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 100010 0.72 0.632324
Target:  5'- uGGCgaGCCGAGgCACGGcCGCcAGGUCGc -3'
miRNA:   3'- cCCG--UGGUUCaGUGUC-GCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 14990 0.72 0.62195
Target:  5'- aGGCACCGcaUCGCgAGCGCGccggaggacaAGGUCGc -3'
miRNA:   3'- cCCGUGGUucAGUG-UCGCGU----------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 57955 0.72 0.642698
Target:  5'- cGGGCAgCAgcgcGGUCGCGGCGUcGGGagGc -3'
miRNA:   3'- -CCCGUgGU----UCAGUGUCGCGuUCCagC- -5'
6363 5' -55 NC_001847.1 + 116135 0.72 0.642698
Target:  5'- cGGGCGCUggGgcgCGCGGCcCGAGG-CGc -3'
miRNA:   3'- -CCCGUGGuuCa--GUGUCGcGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 34286 0.72 0.62195
Target:  5'- uGGGCGCCGcGcUCGCGGCcgucaGCGAGGcuUCGg -3'
miRNA:   3'- -CCCGUGGUuC-AGUGUCG-----CGUUCC--AGC- -5'
6363 5' -55 NC_001847.1 + 28324 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91711 0.71 0.663412
Target:  5'- cGGGUcgcgacgccgGCCAGcagcaGCAGCGCGAGGUCc -3'
miRNA:   3'- -CCCG----------UGGUUcag--UGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 3978 0.71 0.673734
Target:  5'- aGGGCGCCGGGggccgggcgCGCGGCcccGCGGGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--------GUGUCG---CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.