Results 1 - 20 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 117736 | 1.1 | 0.002529 |
Target: 5'- uGGGCACCAAGUCACAGCGCAAGGUCGu -3' miRNA: 3'- -CCCGUGGUUCAGUGUCGCGUUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 48845 | 0.83 | 0.168244 |
Target: 5'- gGGGCGCCucGgccgCGCGGCGCGAGGUaCGg -3' miRNA: 3'- -CCCGUGGuuCa---GUGUCGCGUUCCA-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 3427 | 0.82 | 0.181663 |
Target: 5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3' miRNA: 3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 134901 | 0.8 | 0.257361 |
Target: 5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3' miRNA: 3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 32088 | 0.8 | 0.257361 |
Target: 5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3' miRNA: 3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 8449 | 0.79 | 0.290083 |
Target: 5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3' miRNA: 3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 111262 | 0.79 | 0.290083 |
Target: 5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3' miRNA: 3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 102436 | 0.78 | 0.311236 |
Target: 5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3' miRNA: 3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 38135 | 0.78 | 0.325978 |
Target: 5'- cGGGCACCGAGUCuucgcGCGGCGCGccgccccgAGGgacCGg -3' miRNA: 3'- -CCCGUGGUUCAG-----UGUCGCGU--------UCCa--GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 60857 | 0.77 | 0.365067 |
Target: 5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3' miRNA: 3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 17819 | 0.77 | 0.379075 |
Target: 5'- aGGGCGCCAugccAGU-GCGGCGCAcgucggcgaaacagAGGUCGu -3' miRNA: 3'- -CCCGUGGU----UCAgUGUCGCGU--------------UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 112071 | 0.77 | 0.384947 |
Target: 5'- aGGGCGCCcucggcgacccggcGGUC-CGGCGCAAGGUgGa -3' miRNA: 3'- -CCCGUGGu-------------UCAGuGUCGCGUUCCAgC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 125377 | 0.76 | 0.416078 |
Target: 5'- -aGCACCGGGggGC-GCGCGAGGUCGa -3' miRNA: 3'- ccCGUGGUUCagUGuCGCGUUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 21962 | 0.76 | 0.390028 |
Target: 5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3' miRNA: 3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 35976 | 0.75 | 0.461767 |
Target: 5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3' miRNA: 3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 89887 | 0.75 | 0.434026 |
Target: 5'- gGGGCGCCuucGGggaCGCGGCGCccGAGGUUGu -3' miRNA: 3'- -CCCGUGGu--UCa--GUGUCGCG--UUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 65495 | 0.75 | 0.48077 |
Target: 5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3' miRNA: 3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 64683 | 0.75 | 0.47122 |
Target: 5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3' miRNA: 3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 51830 | 0.74 | 0.529833 |
Target: 5'- aGGCGCCAAG-CGCccccguGCGCG-GGUCGa -3' miRNA: 3'- cCCGUGGUUCaGUGu-----CGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 63302 | 0.74 | 0.490414 |
Target: 5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3' miRNA: 3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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