miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 117736 1.1 0.002529
Target:  5'- uGGGCACCAAGUCACAGCGCAAGGUCGu -3'
miRNA:   3'- -CCCGUGGUUCAGUGUCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 48845 0.83 0.168244
Target:  5'- gGGGCGCCucGgccgCGCGGCGCGAGGUaCGg -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGCGUUCCA-GC- -5'
6363 5' -55 NC_001847.1 + 3427 0.82 0.181663
Target:  5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5'
6363 5' -55 NC_001847.1 + 134901 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 32088 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 8449 0.79 0.290083
Target:  5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 111262 0.79 0.290083
Target:  5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 38135 0.78 0.325978
Target:  5'- cGGGCACCGAGUCuucgcGCGGCGCGccgccccgAGGgacCGg -3'
miRNA:   3'- -CCCGUGGUUCAG-----UGUCGCGU--------UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 17819 0.77 0.379075
Target:  5'- aGGGCGCCAugccAGU-GCGGCGCAcgucggcgaaacagAGGUCGu -3'
miRNA:   3'- -CCCGUGGU----UCAgUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 112071 0.77 0.384947
Target:  5'- aGGGCGCCcucggcgacccggcGGUC-CGGCGCAAGGUgGa -3'
miRNA:   3'- -CCCGUGGu-------------UCAGuGUCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 21962 0.76 0.390028
Target:  5'- cGGGCGCUggGcCGCGGCGCc-GGUUGc -3'
miRNA:   3'- -CCCGUGGuuCaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 125377 0.76 0.416078
Target:  5'- -aGCACCGGGggGC-GCGCGAGGUCGa -3'
miRNA:   3'- ccCGUGGUUCagUGuCGCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 89887 0.75 0.434026
Target:  5'- gGGGCGCCuucGGggaCGCGGCGCccGAGGUUGu -3'
miRNA:   3'- -CCCGUGGu--UCa--GUGUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 64683 0.75 0.47122
Target:  5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3'
miRNA:   3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5'
6363 5' -55 NC_001847.1 + 65495 0.75 0.48077
Target:  5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3'
miRNA:   3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5'
6363 5' -55 NC_001847.1 + 63302 0.74 0.490414
Target:  5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.