Results 1 - 20 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 95764 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 81569 | 0.66 | 0.926487 |
Target: 5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3' miRNA: 3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 62620 | 0.66 | 0.923196 |
Target: 5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3' miRNA: 3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 52844 | 0.66 | 0.920953 |
Target: 5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3' miRNA: 3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 51524 | 0.66 | 0.920953 |
Target: 5'- cGGCGCCGgcaggcGGggGCGGCGCccAGGcGUCGg -3' miRNA: 3'- cCCGUGGU------UCagUGUCGCG--UUC-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 14353 | 0.66 | 0.920953 |
Target: 5'- cGGCGCCugcgGGgaacgcCGcCAGCGCGcGGUCGu -3' miRNA: 3'- cCCGUGGu---UCa-----GU-GUCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 113918 | 0.66 | 0.920953 |
Target: 5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3' miRNA: 3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 46317 | 0.66 | 0.920953 |
Target: 5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3' miRNA: 3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 2221 | 0.66 | 0.920953 |
Target: 5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3' miRNA: 3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 4666 | 0.66 | 0.926487 |
Target: 5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3' miRNA: 3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 32982 | 0.66 | 0.926487 |
Target: 5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3' miRNA: 3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 80238 | 0.66 | 0.926487 |
Target: 5'- cGGGCcacguuGCCGGGUCgACGGCgugccgcaGCAGGGcCu -3' miRNA: 3'- -CCCG------UGGUUCAG-UGUCG--------CGUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 91238 | 0.65 | 0.931777 |
Target: 5'- cGGGguCCGccugcAGcucgcaCGCGGCGCAcaugGGGUCGc -3' miRNA: 3'- -CCCguGGU-----UCa-----GUGUCGCGU----UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 75383 | 0.65 | 0.931777 |
Target: 5'- uGGGaCACCGucucgcGUCGCcGcCGCGAGG-CGg -3' miRNA: 3'- -CCC-GUGGUu-----CAGUGuC-GCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 37032 | 0.65 | 0.931777 |
Target: 5'- gGGGCGCCGGGcUCGCAcucuagccuGgGCuGGGggCGg -3' miRNA: 3'- -CCCGUGGUUC-AGUGU---------CgCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 99943 | 0.65 | 0.931777 |
Target: 5'- aGGGCGCCcAGcCGCGcGCGCuccuccucgAAGGcCGc -3' miRNA: 3'- -CCCGUGGuUCaGUGU-CGCG---------UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 97431 | 0.65 | 0.931777 |
Target: 5'- cGGcGCGCCcAGcaGCAGCGCGcacgugacgAGGUCc -3' miRNA: 3'- -CC-CGUGGuUCagUGUCGCGU---------UCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 27409 | 0.65 | 0.930738 |
Target: 5'- gGGGCGCUGuugccgccggcgcGGUCggugucguucgcaGCGGCGCGGGGg-- -3' miRNA: 3'- -CCCGUGGU-------------UCAG-------------UGUCGCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 97891 | 0.66 | 0.926487 |
Target: 5'- cGGCGCgGAuGgcgaACAGCGCGccguccgccGGGUCGu -3' miRNA: 3'- cCCGUGgUU-Cag--UGUCGCGU---------UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82885 | 0.66 | 0.926487 |
Target: 5'- cGGGCACgCGAGcacgaaGCGGCGCGucuuGUCa -3' miRNA: 3'- -CCCGUG-GUUCag----UGUCGCGUuc--CAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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