miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 32982 0.66 0.926487
Target:  5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3'
miRNA:   3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 62620 0.66 0.923196
Target:  5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3'
miRNA:   3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5'
6363 5' -55 NC_001847.1 + 104806 0.66 0.920953
Target:  5'- cGGGCAgCGGGUCGuagagcaccacCAcGCGCAcguccucgGGGUCc -3'
miRNA:   3'- -CCCGUgGUUCAGU-----------GU-CGCGU--------UCCAGc -5'
6363 5' -55 NC_001847.1 + 78373 0.66 0.920953
Target:  5'- cGGGCgGgCAA-UCGCGGCGCAuGGcCGa -3'
miRNA:   3'- -CCCG-UgGUUcAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 105034 0.66 0.920953
Target:  5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3'
miRNA:   3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 21327 0.66 0.920953
Target:  5'- gGGGUGCCAAGgccauuguggCGCAgacgauGCGCGccGUCGg -3'
miRNA:   3'- -CCCGUGGUUCa---------GUGU------CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 31821 0.66 0.920953
Target:  5'- cGGCGCgGGGgCAgAGUGCGAGGa-- -3'
miRNA:   3'- cCCGUGgUUCaGUgUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 52844 0.66 0.920953
Target:  5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3'
miRNA:   3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 51524 0.66 0.920953
Target:  5'- cGGCGCCGgcaggcGGggGCGGCGCccAGGcGUCGg -3'
miRNA:   3'- cCCGUGGU------UCagUGUCGCG--UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 14353 0.66 0.920953
Target:  5'- cGGCGCCugcgGGgaacgcCGcCAGCGCGcGGUCGu -3'
miRNA:   3'- cCCGUGGu---UCa-----GU-GUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 113918 0.66 0.920953
Target:  5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3'
miRNA:   3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 46317 0.66 0.920953
Target:  5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3'
miRNA:   3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 2221 0.66 0.920953
Target:  5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3'
miRNA:   3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 16973 0.66 0.920953
Target:  5'- -cGCACC--GUC-CAGCGCAGGGa-- -3'
miRNA:   3'- ccCGUGGuuCAGuGUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 49960 0.66 0.915173
Target:  5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3'
miRNA:   3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 95764 0.66 0.915173
Target:  5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3'
miRNA:   3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 31930 0.66 0.915173
Target:  5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3'
miRNA:   3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 29578 0.66 0.915173
Target:  5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 12021 0.66 0.915173
Target:  5'- gGGGCGCCGgcgaGGUCGUAGgcaucCGCAGGGg-- -3'
miRNA:   3'- -CCCGUGGU----UCAGUGUC-----GCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.