miRNA display CGI


Results 101 - 120 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 51780 0.7 0.754273
Target:  5'- cGGCGCCAGcUCGCcccGCGCGucccGGUCGc -3'
miRNA:   3'- cCCGUGGUUcAGUGu--CGCGUu---CCAGC- -5'
6363 5' -55 NC_001847.1 + 51830 0.74 0.529833
Target:  5'- aGGCGCCAAG-CGCccccguGCGCG-GGUCGa -3'
miRNA:   3'- cCCGUGGUUCaGUGu-----CGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 52844 0.66 0.920953
Target:  5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3'
miRNA:   3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 53837 0.69 0.801326
Target:  5'- gGGGCGCUgaaGAG-C-CGGCGCgGGGGUCa -3'
miRNA:   3'- -CCCGUGG---UUCaGuGUCGCG-UUCCAGc -5'
6363 5' -55 NC_001847.1 + 54319 0.66 0.909148
Target:  5'- -uGCccccCCAAGUCGCGGCGCGcGGccuUCGc -3'
miRNA:   3'- ccCGu---GGUUCAGUGUCGCGUuCC---AGC- -5'
6363 5' -55 NC_001847.1 + 54495 0.67 0.889632
Target:  5'- cGGCGCCGGGUCucccGCgAGCGCcgccGUCGc -3'
miRNA:   3'- cCCGUGGUUCAG----UG-UCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 56385 0.68 0.827745
Target:  5'- cGGCGCuCGGGUCGgggaggucggcCGGCGCGGGGa-- -3'
miRNA:   3'- cCCGUG-GUUCAGU-----------GUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 57955 0.72 0.642698
Target:  5'- cGGGCAgCAgcgcGGUCGCGGCGUcGGGagGc -3'
miRNA:   3'- -CCCGUgGU----UCAGUGUCGCGuUCCagC- -5'
6363 5' -55 NC_001847.1 + 57992 0.68 0.85252
Target:  5'- cGGCGC--GGUgGCGGCGCAGgcggcggcGGUCGc -3'
miRNA:   3'- cCCGUGguUCAgUGUCGCGUU--------CCAGC- -5'
6363 5' -55 NC_001847.1 + 58639 0.67 0.874719
Target:  5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3'
miRNA:   3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 58818 0.7 0.763943
Target:  5'- cGGCGCCuGGgC-CGGUGCGAgGGUCGg -3'
miRNA:   3'- cCCGUGGuUCaGuGUCGCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 58898 0.67 0.868024
Target:  5'- aGGuGCGCCuc--CAUGGCGUcGGGUCGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 59160 0.68 0.860378
Target:  5'- cGGCGCCGcuuGGcCAgGGgGCGGcGGUCGa -3'
miRNA:   3'- cCCGUGGU---UCaGUgUCgCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 59940 0.67 0.868024
Target:  5'- aGGGCGCCAcgcaagcGUC-CGGCGUGGcGUCGu -3'
miRNA:   3'- -CCCGUGGUu------CAGuGUCGCGUUcCAGC- -5'
6363 5' -55 NC_001847.1 + 60255 0.69 0.810301
Target:  5'- cGGCGCCGAcuUCGCAgGCGCuugcguGGUCa -3'
miRNA:   3'- cCCGUGGUUc-AGUGU-CGCGuu----CCAGc -5'
6363 5' -55 NC_001847.1 + 60739 0.68 0.860378
Target:  5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3'
miRNA:   3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 61185 0.72 0.611584
Target:  5'- aGGGCgGCUAGGUCGCcGUGagaGAGGUCu -3'
miRNA:   3'- -CCCG-UGGUUCAGUGuCGCg--UUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.