miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 106822 0.68 0.81911
Target:  5'- gGGGCGCCGGGcC-CGGCGCccgccucucgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 17123 0.7 0.714582
Target:  5'- uGGaACCAGgagacGUCGCAGCGCA-GGUUGg -3'
miRNA:   3'- cCCgUGGUU-----CAGUGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 125427 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 4608 0.67 0.882656
Target:  5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3'
miRNA:   3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5'
6363 5' -55 NC_001847.1 + 67187 0.68 0.825173
Target:  5'- aGGGCGCgCAGGUagcacaCGCcgugccgagcggcgGGCGCGcGGUCGa -3'
miRNA:   3'- -CCCGUG-GUUCA------GUG--------------UCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 19895 0.68 0.836196
Target:  5'- cGGGCGCgAGGUagaAGCGCAcgagGGcGUCGc -3'
miRNA:   3'- -CCCGUGgUUCAgugUCGCGU----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 59160 0.68 0.860378
Target:  5'- cGGCGCCGcuuGGcCAgGGgGCGGcGGUCGa -3'
miRNA:   3'- cCCGUGGU---UCaGUgUCgCGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 101170 0.68 0.860378
Target:  5'- gGGGC-CgGGGUCGgGGCGC--GGUCu -3'
miRNA:   3'- -CCCGuGgUUCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 72908 0.67 0.868024
Target:  5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3'
miRNA:   3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 58639 0.67 0.874719
Target:  5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3'
miRNA:   3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.