miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 24929 0.68 0.844458
Target:  5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3'
miRNA:   3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 72908 0.67 0.868024
Target:  5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3'
miRNA:   3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 58639 0.67 0.874719
Target:  5'- uGGGCcacgaagauuuccGCCGGGUCGCAcGCuuGCGGcGGUUGg -3'
miRNA:   3'- -CCCG-------------UGGUUCAGUGU-CG--CGUU-CCAGC- -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 17123 0.7 0.714582
Target:  5'- uGGaACCAGgagacGUCGCAGCGCA-GGUUGg -3'
miRNA:   3'- cCCgUGGUU-----CAGUGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 90161 0.67 0.896375
Target:  5'- cGGGCgcaugGCCAAG-CGCAGCcuuGCGGGGcugcugCGg -3'
miRNA:   3'- -CCCG-----UGGUUCaGUGUCG---CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 124554 0.66 0.902882
Target:  5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3'
miRNA:   3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 46096 0.66 0.909148
Target:  5'- cGGcGCGCCAugccGUCGCccAGCGCGcacacGGcGUCGu -3'
miRNA:   3'- -CC-CGUGGUu---CAGUG--UCGCGU-----UC-CAGC- -5'
6363 5' -55 NC_001847.1 + 129321 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 125182 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.