miRNA display CGI


Results 101 - 120 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 24929 0.68 0.844458
Target:  5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3'
miRNA:   3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 132391 0.66 0.915173
Target:  5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 60857 0.77 0.365067
Target:  5'- cGGCGCCAGggcGUC-CAGCGCGGGG-CGg -3'
miRNA:   3'- cCCGUGGUU---CAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 59309 0.73 0.590907
Target:  5'- aGGGUGCCAGGgCGCGGCGCc-GG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 3944 0.72 0.641661
Target:  5'- cGGGCGgCGAG-CGCgacccacagcgccAGCGCGAGGUgGg -3'
miRNA:   3'- -CCCGUgGUUCaGUG-------------UCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 17123 0.7 0.714582
Target:  5'- uGGaACCAGgagacGUCGCAGCGCA-GGUUGg -3'
miRNA:   3'- cCCgUGGUU-----CAGUGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 135012 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 133790 0.68 0.822585
Target:  5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3'
miRNA:   3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 40597 0.67 0.875452
Target:  5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 134044 0.67 0.868024
Target:  5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3'
miRNA:   3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 35606 0.66 0.909148
Target:  5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3'
miRNA:   3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 28139 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.