miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 48194 0.67 0.896375
Target:  5'- cGGGC-UCGGGgcgCGCGGCGCugcuGUCGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGCGuuc-CAGC- -5'
6363 5' -55 NC_001847.1 + 66467 0.67 0.895712
Target:  5'- cGGGCACgGuagucucAGUCGCc-CGCAGGGgCGg -3'
miRNA:   3'- -CCCGUGgU-------UCAGUGucGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 3264 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 124715 0.67 0.894377
Target:  5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3'
miRNA:   3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 130186 0.67 0.889632
Target:  5'- cGGGCGCCcGGcCugaagagacggGCGGCGCgGAGGgcgCGg -3'
miRNA:   3'- -CCCGUGGuUCaG-----------UGUCGCG-UUCCa--GC- -5'
6363 5' -55 NC_001847.1 + 113435 0.67 0.889632
Target:  5'- cGGCGCCGcguccaaaaucaGGUCACAGCccaUAAGGaUCa -3'
miRNA:   3'- cCCGUGGU------------UCAGUGUCGc--GUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 95306 0.67 0.889632
Target:  5'- uGGCGCCuccAGgCGCGGCGCcggcAGGGcCGa -3'
miRNA:   3'- cCCGUGGu--UCaGUGUCGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 12379 0.66 0.902882
Target:  5'- cGGCugCGgccUCGgGGCGCGuguGGUCGg -3'
miRNA:   3'- cCCGugGUuc-AGUgUCGCGUu--CCAGC- -5'
6363 5' -55 NC_001847.1 + 21741 0.66 0.902882
Target:  5'- cGGCGCCGGccCGCGcGCGCGGGGg-- -3'
miRNA:   3'- cCCGUGGUUcaGUGU-CGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 21772 0.66 0.902882
Target:  5'- cGGCGCCGGGcC-CGGCGCc-GGcCGg -3'
miRNA:   3'- cCCGUGGUUCaGuGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 92441 0.66 0.915173
Target:  5'- -aGCAUCAAucGUgcgacaCACGGCGCAGGGcCGg -3'
miRNA:   3'- ccCGUGGUU--CA------GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 22369 0.66 0.915173
Target:  5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3'
miRNA:   3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5'
6363 5' -55 NC_001847.1 + 47532 0.66 0.914581
Target:  5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3'
miRNA:   3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5'
6363 5' -55 NC_001847.1 + 35606 0.66 0.909148
Target:  5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3'
miRNA:   3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 26508 0.66 0.909148
Target:  5'- cGGGCcuGCCGGG-CGCGGgGCcGGGggCGu -3'
miRNA:   3'- -CCCG--UGGUUCaGUGUCgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 116415 0.66 0.909148
Target:  5'- uGGGCcCCGGGcCGC-GCGCuuGGGcUCGa -3'
miRNA:   3'- -CCCGuGGUUCaGUGuCGCGu-UCC-AGC- -5'
6363 5' -55 NC_001847.1 + 54319 0.66 0.909148
Target:  5'- -uGCccccCCAAGUCGCGGCGCGcGGccuUCGc -3'
miRNA:   3'- ccCGu---GGUUCAGUGUCGCGUuCC---AGC- -5'
6363 5' -55 NC_001847.1 + 100873 0.66 0.902882
Target:  5'- cGGCGCCcAGcCGCcGCGCGccGGUCu -3'
miRNA:   3'- cCCGUGGuUCaGUGuCGCGUu-CCAGc -5'
6363 5' -55 NC_001847.1 + 99183 0.66 0.902882
Target:  5'- uGGCGCCcucguGGUCcucGCGCGAGG-CGg -3'
miRNA:   3'- cCCGUGGu----UCAGuguCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 88002 0.67 0.889632
Target:  5'- cGGGC-CCGAGgggCGCGGCGuCAucGG-CGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GUu-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.