Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6364 | 5' | -56.1 | NC_001847.1 | + | 117383 | 1.09 | 0.00224 |
Target: 5'- gCGCAAGUGGAUGCUCUGCGAGCGCGAg -3' miRNA: 3'- -GCGUUCACCUACGAGACGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 18634 | 0.81 | 0.161709 |
Target: 5'- gCGCAGGcagaGGUGCUCgGCGAGCGCGAc -3' miRNA: 3'- -GCGUUCac--CUACGAGaCGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 77507 | 0.76 | 0.355512 |
Target: 5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3' miRNA: 3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 116676 | 0.76 | 0.344473 |
Target: 5'- uGCGuGUGGGUccgGCgCUGCGGGCGCGGc -3' miRNA: 3'- gCGUuCACCUA---CGaGACGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 7242 | 0.75 | 0.410828 |
Target: 5'- gGCuGGUcGGGUgGCUgUGCGGGCGCGGc -3' miRNA: 3'- gCGuUCA-CCUA-CGAgACGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 21861 | 0.75 | 0.402108 |
Target: 5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3' miRNA: 3'- gCGUUCACCuACGa----GACGCuCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 125465 | 0.74 | 0.437676 |
Target: 5'- gGCGGGUcGGcggcaGCUCgcgGCGGGCGCGAg -3' miRNA: 3'- gCGUUCA-CCua---CGAGa--CGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 14562 | 0.72 | 0.574255 |
Target: 5'- cCGCAGcGcGGGUGCUg-GCGGGCGCGc -3' miRNA: 3'- -GCGUU-CaCCUACGAgaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 70698 | 0.72 | 0.564039 |
Target: 5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3' miRNA: 3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 42526 | 0.71 | 0.594808 |
Target: 5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3' miRNA: 3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 64209 | 0.71 | 0.594808 |
Target: 5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3' miRNA: 3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 20071 | 0.71 | 0.605129 |
Target: 5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3' miRNA: 3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 93752 | 0.71 | 0.625827 |
Target: 5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3' miRNA: 3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 106099 | 0.7 | 0.687768 |
Target: 5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3' miRNA: 3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 49725 | 0.7 | 0.687768 |
Target: 5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3' miRNA: 3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 53584 | 0.7 | 0.635151 |
Target: 5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3' miRNA: 3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 3286 | 0.7 | 0.687768 |
Target: 5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3' miRNA: 3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 112099 | 0.7 | 0.636187 |
Target: 5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3' miRNA: 3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 41639 | 0.7 | 0.675454 |
Target: 5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3' miRNA: 3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 56341 | 0.7 | 0.667214 |
Target: 5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3' miRNA: 3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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